Introminer

Created by Julie Shay and Claudio Slamovits.
Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.

Features

Reads Genbank format sequence files containing genomic data (partial or full genome data)
Extracts various useful information on introns such as number, size, position in the genes and sequence
Detects introns with noncanonical borders
Output includes CDS sequences of all the genes (introns removed)

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Science/Research

User Interface

.NET/Mono

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2012-10-24

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