im-browser

Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets.

Home page: http://mib.helsinki.fi

Features

Works as a Matlab program under Windows/Linux/MacOS Matlab, or as a standalone application (Windows/Mac OS, 64bit)
Open source, no license/fee required
Extendable with custom plugins
Generation of multi-dimensional image stacks (3D/4D)
Alignment of multi-dimensional stacks and images within these stacks
Brightness, contrast, gamma, image mode adjustments, resize, crop functions
Automatic/manual image segmentation with help of filters and interpolation in XY, XZ, or YZ planes
Quantification and statistics for 2D/3D objects
Export of images or models to Matlab, Amira, IMOD, TIF, NRRD formats
Direct 3D visualization using Matlab isosurfaces, Fiji 3D viewer, and Imaris
Log of performed actions
Customizable Undo option
Colorblind friendly color schemes

Project Samples

A screenshot of the MIB user interface. The program menu, toolbar, and panels are highlighted. A brief description of each element is provided.

Main window and additional windows of MIB

Modeling of different organelles of Trypanosoma brucei

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

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im-browser Web Site

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Additional Project Details

Intended Audience

Science/Research

Programming Language

MATLAB

Related Categories

MATLAB Scientific Engineering, MATLAB Image Processing Software, MATLAB 3D Viewers

Registered

2015-09-24

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