Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets.

Home page: http://mib.helsinki.fi

Features

  • Works as a Matlab program under Windows/Linux/MacOS Matlab, or as a standalone application (Windows/Mac OS, 64bit)
  • Open source, no license/fee required
  • Extendable with custom plugins
  • Generation of multi-dimensional image stacks (3D/4D)
  • Alignment of multi-dimensional stacks and images within these stacks
  • Brightness, contrast, gamma, image mode adjustments, resize, crop functions
  • Automatic/manual image segmentation with help of filters and interpolation in XY, XZ, or YZ planes
  • Quantification and statistics for 2D/3D objects
  • Export of images or models to Matlab, Amira, IMOD, TIF, NRRD formats
  • Direct 3D visualization using Matlab isosurfaces, Fiji 3D viewer, and Imaris
  • Log of performed actions
  • Customizable Undo option
  • Colorblind friendly color schemes

Project Samples

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Intended Audience

Science/Research

Programming Language

MATLAB

Related Categories

MATLAB Scientific Engineering, MATLAB Image Processing Software, MATLAB 3D Viewers

Registered

2015-09-24