HOPPscore - Protein Structure Quality download

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.

Features

Protein Structure Quality Analysis
Score protein structures based on fragment frequencies.

Project Activity

See All Activity >

License

Academic Free License (AFL)

Follow HOPPscore - Protein Structure Quality

HOPPscore - Protein Structure Quality Web Site

nel_h2

Get the most trusted enterprise browser

Advanced built-in security helps IT prevent breaches before they happen

Defend against security incidents with Chrome Enterprise. Create customizable controls, manage extensions and set proactive alerts to keep your data and employees protected without slowing down productivity.

Download Chrome

Rate This Project

User Reviews

Be the first to post a review of HOPPscore - Protein Structure Quality!

Additional Project Details

Operating Systems

Cygwin, Linux

Intended Audience

Education, Science/Research

User Interface

Command-line

Programming Language

C, Perl

Database Environment

Flat-file

Related Categories

Perl Molecular Science Software, Perl Bio-Informatics Software, C Molecular Science Software, C Bio-Informatics Software

Registered

2010-10-30

Similar Business Software

HyperProtein

HyperProtein is Hypercube, Inc.'s new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the...

See Software
Eidogen-Sertanty Target Informatics Platform (TIP)

Eidogen-Sertanty's Target Informatics Platform (TIP) is the world's first structural informatics system and knowledgebase that enables researchers with the ability to interrogate the druggable genome from a structural perspective. TIP amplifies the rapidly expanding body of experimental protein...

See Software
Swiss-PdbViewer

Swiss-PdbViewer (aka DeepView) is an application that provides a user-friendly interface allowing to analysis of several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
Evo Designer

Evo Designer is an advanced tool developed by the Arc Institute, leveraging the capabilities of the Evo 2 genomic foundation model to facilitate DNA sequence generation and analysis. This platform enables users to input nucleotide sequences or specify organisms, prompting the model to generate...

See Software
ACD/Labs Percepta Platform

Percepta offers calculation of a variety of physicochemical (PhysChem) properties, ADME properties, and toxicity endpoints. Easily evaluate results from physicochemical, ADME, and toxicity calculators—each module offers prediction—specific information and tools such as structure highlighting and...

See Software