GNAT download | SourceForge.net

GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID.

March 2017: We started to upload GNAT output on Medline. See files/results/medline/.

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Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

Programming Language

Java

Database Environment

JDBC, MySQL

Related Categories

Java Bio-Informatics Software, Java Medical Software, Java Machine Learning Software

Registered

2010-02-23

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