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Genix is an online automated pipeline for bacterial genome annotation that integrates the programs Prodigal, BLAST, RNAmmer, tRNAscan-SE, INFERNAL, ARAGORN and HMMER, and the databases Uniprot, Antifam and Rfam.
Features
- Protein-coding gene prediction by Prodigal
- Non-coding gene prediction by RNAmmer, tRNAscan-SE, INFERNAL and Aragorn
- Protein identification by BLAST against Uniprot
- Spurious ORFs removing using Antifam
- Genbank submission files
- Dynamic generation of clustered protein databases using tax IDs and CD-HIT / USEARCH
- Frameshift identification
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