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facepai_release.zip (10.7 kB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Sigsgaard | 2019-09-24 | ||
| Sed_raw_reads | 2019-05-22 | ||
| Soi_raw_reads | 2019-05-22 | ||
| Wat_raw_reads | 2019-05-22 | ||
| Wat_results | 2019-05-22 | ||
| Sed_results | 2019-05-22 | ||
| Soi_results | 2019-05-22 | ||
| Totals: 7 Items | 0 | ||
FACEPAI (& CaPReSe)
Fast And Consistent Environmental-DNA Processing And Identification (& Conversion and Preparation of Reference Sequences)
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples Emma Wahlberg, Swedish Museum of Natural History, 2019, emma.wahlberg@nrm.se
To install, clone the repository:
git clone https://git.code.sf.net/p/facepai/code facepai
You may also download the facepai_release.zip file and extract on your computer.
Usage and instructions: https://sourceforge.net/p/facepai/code/ci/master/tree/readme.md
Citation:
Wahlberg, E. 2019. FACEPAI – A script for fast and consistent environmental DNA processing and identification. BMC Ecology, in review.