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facepai_release.zip (10.7 kB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Wat_analysis.log | 2019-04-18 | 62.8 kB | |
| Wat_BLAST_results.tab | 2019-04-18 | 2.3 MB | |
| Wat_1f_representatives.fasta | 2019-04-18 | 820.4 kB | |
| Wat_1f_representatives.uchimeta | 2019-04-18 | 451.9 kB | |
| Wat_1f.statsta | 2019-04-18 | 119.2 kB | |
| Wat_1f.structta | 2019-04-18 | 78.0 kB | |
| Wat_1f.swarmsta | 2019-04-18 | 149.0 kB | |
| Wat.fasta | 2019-04-18 | 1.1 MB | |
| Wat | 2019-04-18 | 1.7 MB | |
| Wat.fas | 2019-04-18 | 1.1 MB | |
| Wat.log | 2019-04-18 | 3.6 kB | |
| fastp.html | 2019-04-18 | 453.5 kB | |
| fastp.json | 2019-04-18 | 185.9 kB | |
| Wat_pooled_F_filtered.fastq | 2019-04-18 | 430.5 MB | |
| Wat_pooled_R_filtered.fastq | 2019-04-18 | 430.5 MB | |
| Wat_pooled_R.fastq | 2019-04-18 | 432.7 MB | |
| Wat_pooled_F.fastq | 2019-04-18 | 432.7 MB | |
| Totals: 17 Items | 1.7 GB | 0 | |
FACEPAI (& CaPReSe)
Fast And Consistent Environmental-DNA Processing And Identification (& Conversion and Preparation of Reference Sequences)
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples Emma Wahlberg, Swedish Museum of Natural History, 2019, emma.wahlberg@nrm.se
To install, clone the repository:
git clone https://git.code.sf.net/p/facepai/code facepai
You may also download the facepai_release.zip file and extract on your computer.
Usage and instructions: https://sourceforge.net/p/facepai/code/ci/master/tree/readme.md
Citation:
Wahlberg, E. 2019. FACEPAI – A script for fast and consistent environmental DNA processing and identification. BMC Ecology, in review.