EpiTopoFold Files

Brought to you by: myf3748

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size
04_Screening_Analysis	2026-02-05
03_AlphaFold2_Pred	2026-02-05
02_Rosetta_Design	2026-02-05
01_Topobuilder_Design	2026-02-05
EpiTopoFold User Manual.docx	2026-02-05	3.1 MB
Totals: 5 Items		3.1 MB

Other Useful Business Software

Stop Cyber Threats with VM-Series Next-Gen Firewall on Azure

Native application identity and user-based security for your Azure cloud

Gain integrated visibility across all traffic in a single pass. Deploy Palo Alto Networks VM-Series to determine application identity and content while automating security policy updates via rich APIs.

Get a free trial

Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.

Try free now

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build, govern, and optimize agents and models with Gemini Enterprise Agent Platform.

Start Free

Recommended Projects

IBEIP
We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. Citation: Yun-Fei Ma, Ye Liu. Intelligent Batch Epitope Identification and Partitioning: an intelligent tool for the identification of B cell dominant epitopes. Brief. Bioinform. 2025, 26(4):bbaf310.
Discontinuous Deformation Analysis
Discontinuous Deformation Analysis is discrete element method useful for simulating the motion of large numbers of individual bodies in independent motion, subject to contact constraints.
Scaffold Hunter
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
VIRTUAL GEOSCIENCE WORKBENCH
The Virtual Geoscience Workbench for discontinuous systems is a computer software environment for modelling. We have made the combined Finite-Discrete Element Method (FEMDEM) the core of our solids technology.
NifFINDER
A preditor of Nif proteins