EpiTopoFold Files

Brought to you by: myf3748

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size
04_Screening_Analysis	2026-02-05
03_AlphaFold2_Pred	2026-02-05
02_Rosetta_Design	2026-02-05
01_Topobuilder_Design	2026-02-05
EpiTopoFold User Manual.docx	2026-02-05	3.1 MB
Totals: 5 Items		3.1 MB

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Powerful App Monitoring Without Surprise Bills

AppSignal starts at $23/month with all features included. No overages, no hidden fees. 30-day free trial.

Tired of monitoring tools that punish you for scaling? AppSignal offers transparent, predictable pricing with every feature unlocked on every plan. Track errors, monitor performance, detect anomalies, and manage logs across Ruby, Python, Node.js, and more. Trusted by developers since 2012 with free dev-to-dev support. No credit card required to start your 30-day trial.

Try AppSignal Free

Featured

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Recommended Projects

IBEIP
We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. Citation: Yun-Fei Ma, Ye Liu. Intelligent Batch Epitope Identification and Partitioning: an intelligent tool for the identification of B cell dominant epitopes. Brief. Bioinform. 2025, 26(4):bbaf310.
GFinisher
genome assembler finisher, gap, gap close, sort contig
Scaffold Hunter
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
golem
A Framework for Building Robust Shiny Apps
TransposonPSI
TransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements.