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bam_compact_split_util_readme.txt 2015-08-18 585 Bytes
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bam_compact_split_util.zip 2015-08-18 3.2 kB
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Totals: 7 Items   9.9 MB 1 
1. bam2compact.sh : converts  bam (single ended)  to  compact file

2. split.pl : split a compact file into compact files separated by chromosomes (_chr*.txt files)

3. paired_end_bam2split.r : splits a paired end bam file to splitted compact files (_chr*.txt)

4. sam2compact.pl : converts a sam file to a compact file (prerequisite for bam2compact.sh)

5. split.pl :  splits a compact file by chromosomes. 

Note: Files ending with .sh are bash scripts.  .r stands for "R" script file so that can be run with "Rscript".    ".pl" stands for perl scripts.    

By Songjoon Baek 2015
Source: bam_compact_split_util_readme.txt, updated 2015-08-18