dnase2tf_R Files

dnase2tf finds footprint candidates from the DNase-I seq data

Brought to you by: sojbaek

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Name	Modified	Size	InfoDownloads / Week
Parent folder
Makefile	2014-09-19	635 Bytes	0
calcDFT.cpp	2014-09-19	23.2 kB	0
bamfilereader.h	2014-09-19	712 Bytes	0
bamfilereader.cpp	2014-09-19	3.1 kB	0
Totals: 4 Items		27.7 kB	0

1. bam2compact.sh : converts  bam (single ended)  to  compact file

2. split.pl : split a compact file into compact files separated by chromosomes (_chr*.txt files)

3. paired_end_bam2split.r : splits a paired end bam file to splitted compact files (_chr*.txt)

4. sam2compact.pl : converts a sam file to a compact file (prerequisite for bam2compact.sh)

5. split.pl :  splits a compact file by chromosomes. 

Note: Files ending with .sh are bash scripts.  .r stands for "R" script file so that can be run with "Rscript".    ".pl" stands for perl scripts.    

By Songjoon Baek 2015

Source: bam_compact_split_util_readme.txt, updated 2015-08-18

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dnase2tf_R Files

dnase2tf finds footprint candidates from the DNase-I seq data

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