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DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
License
GNU General Public License version 2.0 (GPLv2)Follow dnaa
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Easy install, well documented, works as advertised & quite fast. 5/5 stars!