| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| CYC2008_Complex_dataset | 2019-05-18 | ||
| CORUM_Complex_dataset | 2019-05-18 | ||
| CompEvaluator_V2.jar | 2019-05-18 | 272.7 kB | |
| CompEvaluator.jar | 2018-09-28 | 249.5 kB | |
| Example_Benchmark_Complexes.txt | 2017-09-20 | 168 Bytes | |
| README.txt | 2017-09-20 | 2.0 kB | |
| Example_Predicted_Clusters.txt | 2017-09-20 | 160 Bytes | |
| Totals: 7 Items | 524.5 kB | 0 |
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-------------------------------------------------------------------------- CompEvaluator -------------------------------------------------------------------------------
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DESCRIPTION:
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CompEvaluator is an open source software that computes 12 performance assessment measures to evaluate a protein complex prediction method against a benchmark protein complexes.
The 12 performance assessment measures include:
Precision, Recall(Sensitivity1), F1-Measure
Sensitivity2, PPV, Geometric Accuracy
HM_CL, HM_CO, Homogeneity
Jaccard_CL, Jaccard_CO, Jaccard_Fmeasure
INTERFACES : GUI
DEPENDENCIES : JDK 8.0
Input & Output Files
--------------------------
Input:
This program accepts a text file as input data with the following format:
"Complex_id;Complex_name;subunits__UniProt_IDs"
Output:
The output is a text file contains the result of the 12 performance assessment measures.
How to execute CompEvaluator
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You should do the following steps:
1- Put benchmark complex data set into software folder
(Note that data set should be in this format : Complex_id; Complex_name; subunits__UniProt_IDs )
2- Insert prediction clusters data set into software
(Note that data set should be in this format : Complex_id;Complex_name;subunits__UniProt_IDs )
3- Click "Start" button to compute the selected measures this options
4- Click "Save result" to store the results.
Copyright 2017 - Laboratory of Database Reaserch Groups ( DBRG ), University of Tehran, Tehran, IRAN.
All right Reserved.
Enjoy!
