CodaChrome is a tool for visually exploring how the proteome of a bacterium of interest relates to every other finished bacterial genome in GenBank.

Features

  • Gene/Species "Select" Tool - real time substring searches
  • "Sort" rows by a single protein, segment of adjacent proteins or whole proteome
  • "Normalized Sort" allows you to sort by whole proteome identity normalized by replicon length
  • "Save View" - Saves current view to an image file
  • "Blast Online" searches blast alignments on NCBI's website
  • Zoom in/out, view selection, zoom all out
  • Ctrl/Command click on gene arrow and drag to select large segments
  • Gene and Species arrows can can be click dragged or moved with arrow keys

Project Samples

Salmonella 14028S Pathogenicity Island

Project Activity

See All Activity >

Follow CodaChrome

CodaChrome Web Site

Other Useful Business Software
$300 Free Credits to Build on Google Cloud Icon
$300 Free Credits to Build on Google Cloud

New to Google Cloud? Get $300 in credits to explore Compute Engine, BigQuery, Cloud Run, Gemini Enterprise Agent Platform, and more.

Start your next project with $300 in free Google Cloud credit. Spin up VMs, run containers, query petabytes in BigQuery, or build agents with Gemini Enterprise Agent Platform. Once your credits are used, keep building with 20+ always-free tier products including Compute Engine, Cloud Storage, GKE, and Cloud Run functions. No commitment required—just sign up and start building.
Claim $300 Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of CodaChrome!

Additional Project Details

Registered

2012-12-06
Report inappropriate content