cnvkit.sh

A short script to run cnvkit

Brought to you by: ccpan

Downloads: 0 This Week

Last Update: 2025-02-11

Get an email when there's a new version of cnvkit.sh

cnvkit.sh is a shell script to run CNVkit for exome-seq. The shell uses the files produced by exome_test.sh. It allows for recentering the baseline by the average log2ratio of a certain chromosome.
***Update***
The seg can be annotated by cytoband with multithreading.
Individual chromosomal scattergrams are plotted.

Project Activity

See All Activity >

Follow cnvkit.sh

cnvkit.sh Web Site

Other Useful Business Software

Ship Agents Faster Icon

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Get Started Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of cnvkit.sh!

Additional Project Details

Registered

2018-07-24

Report inappropriate content

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Get Started Free

Recommended Projects

SegyMAT
SegyMAT is a set of Matlab/Octave m-files to read and write SEG Y data following SEG Y Revision 0 and 1
Shell Script Compiler
Shell script compiler
gsegyview
Free cross-platform viewer for seismic data in SEG-Y format (Revision 1 draft 6 and its modifications).
seqgene
An analysis pipeline for mining exome-Seq and RNA-Seq data, focusing on quality control, SNP identification and annotation, RNA quantification, differentially expressed genes analysis, eqtl, and pathway analysis. http://seqgene.sourceforge.net
Scanner Button Daemon
A scanner button daemon for Linux (and possibly other Unix-like operating systems) which allows you to trigger certain actions (e.g. run a shell script) whenever one of the scanner's front panel buttons has been pressed.