APP automates and allows distributed computing of common proteomics tasks using a java-front end to provide both GUI and server parts. It is highly recommended for use with the Trans Proteomic Pipeline but this is not a requirement.

Features

  • Please note that APP server demands Java 7 for monitoring of folders
  • Easily distribute and monitor execution of dozens of proteomics tools. Including: OMSSA,Myrimatch,X!Tandem, MSGF-+ Peptide, Protein and iProphet + more.
  • Add computers as nodes to a simple distributed cluster. Set up APP on an amazon image and easily scale your infrastructure within a few minutes.
  • Quick screencast of setup and task submission: http://www.youtube.com/watch?v=Vpzr8LAF5iY
  • Major update released, including new dokumentation, have a look. Linux installer and source to follow in a day or two.
  • Quick fix done to add missing unimod.xml file. For those that have had problems with tthe search plugin, please redownload.

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow Automated Proteomics Pipeline

Automated Proteomics Pipeline Web Site

Other Useful Business Software
Our Free Plans just got better! | Auth0 Icon
Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Try free now
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Automated Proteomics Pipeline!

Additional Project Details

Registered

2012-07-04