AREM

Brought to you by: dnewkirk8, jakebiesinger

Downloads: 0 This Week

Last Update: 2013-04-15

Get an email when there's a new version of AREM

A peak caller for ChIP-Seq experiments that robustly handles short reads with *multiple* possible mappings. Releases are hosted here, but development source code is available at https://github.com/jakebiesinger/AREM.

A Google group has been set up to help with questions from the community and for announcements of new builds.

http://groups.google.com/group/arem-announcements

Features

Assignment of probabilities to each potential alignment for repetitive sequence in NGS datasets.
Peak calling for enrichment-based techniques, such as ChIP-Seq
Repetitive elements

Project Activity

See All Activity >

Follow AREM

Other Useful Business Software

Save Up to 91% on Cloud Compute With Spot VMs Icon

Save Up to 91% on Cloud Compute With Spot VMs

Automatic sustained-use discounts. One free VM per month. No negotiation needed.

Run batch jobs at 60-91% off with Spot VMs. Long-running workloads get automatic discounts with sustained use.

Try Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of AREM!

Additional Project Details

Registered

2010-09-16

Report inappropriate content

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Recommended Projects

Greasemonkey Port
Greasemonkey Port for the SeaMonkey Browser
TFAST
Software for analysis of afSELEX-seq data
ChIP-Seq
The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
Thai Ipod
More info at <a href="http://groups.google.com/group/ThaiIpod"> http://groups.google.com/group/ThaiIpod</a> <br>IpodWiard Tutorial at <a href="http://th.wikibooks.org/wiki/IpodWizard"> http://th.wikibooks.org/wiki/IpodWizard </a>
animo
The Animo conception is mix of data, data-model and behavior. The animotron is the Animo language interpretator. The code here https://github.com/animotron The discussion group here https://groups.google.com/group/animotron?hl=en