A peak caller for ChIP-Seq experiments that robustly handles short reads with *multiple* possible mappings. Releases are hosted here, but development source code is available at https://github.com/jakebiesinger/AREM.

A Google group has been set up to help with questions from the community and for announcements of new builds.

http://groups.google.com/group/arem-announcements

Features

  • Assignment of probabilities to each potential alignment for repetitive sequence in NGS datasets.
  • Peak calling for enrichment-based techniques, such as ChIP-Seq
  • Repetitive elements

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Registered

2010-09-16
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