The script takes fastq files from sequence runs (or from bam files converted using bam2fastq) and aligns to a user-selected genome.

Additional options to only convert reads above a certain mapping score, removing duplicates and generating bed files (requires Bedtools set in path).

Project Activity

See All Activity >

Follow wham_bam

wham_bam Web Site

Other Useful Business Software
Veeam Data Platform v13.1 Icon
Veeam Data Platform v13.1

Move workloads across hypervisors and clouds with no vendor lock-in. Try VDP free today.

Try Veeam Data Platform today. Experience the unified platform that's secure by design, portable by default, and proven to recover clean, fast, and anywhere.
Try Now
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of wham_bam!

Additional Project Details

Registered

2012-10-26
Report inappropriate content