Whole-Genome Shotgun Assembler Feature Requests

Brought to you by: brianwalenz, jasonmiller9704, mcschatz, skoren

Feature Requests Maximize Restore

# Sort A -> Z Sort Z -> A	Summary▾ Sort A -> Z Sort Z -> A	Milestone▾ Sort A -> Z Sort Z -> A Filter by Milestone	Status▾ Sort A -> Z Sort Z -> A Filter by Status	Owner▾ Sort A -> Z Sort Z -> A Filter by Owner	Created▾ Sort A -> Z Sort Z -> A	Updated▾ Sort A -> Z Sort Z -> A	Priority▾ Sort A -> Z Sort Z -> A
142	Cannot determine type of file '.gkpStore:untrim'. Tried	Terminator	open		2016-07-06	2016-07-06	5
141	sort with multiple thread support to improve performance	Terminator	open		2016-07-05	2016-07-06	3
140	extreme disk usage issue	Assembly_analysis	open		2015-05-17	2015-05-18	5
139	runCA SLURM/DRMAA support	Assembly_analysis	open		2015-05-15	2015-11-16	5
136	Compressed input and output to meryl and merTrim	None	open		2012-09-11	2012-09-11	5
135	Move pacBio correction results to separate subdir(s)	None	open		2012-08-21	2012-08-21	5
133	correctPacBio in 550Mb genome	Assembly_analysis	open		2012-01-26	2012-01-26	5
130	nearly identical sequence in contigs	Assembly_analysis	open		2011-10-27	2011-10-27	5
129	problem solexa assembly	Assembly_pipeline	pending	Jason Miller	2011-09-28	2011-09-30	5
127	Parallel gzip - pigz	None	open	Brian Walenz	2010-12-15	2011-04-04	5
123	Automatic utgErrorLimit for Illumina	Assembly_pipeline	open	Sergey Koren	2010-06-09	2010-06-09	3
122	Incremental addition of new reads.	Assembly_pipeline	open		2010-06-02	2010-06-02	5
117	comparative assembly feature	Scaffolder	open		2010-01-14	2010-01-14	5
116	unitigger is randomly accessing gkpStore	Unitigger	open		2009-10-08	2009-10-08	5
111	sffToCA -discardLinkerPositiveReads	Gatekeeper	open		2009-07-02	2009-07-02	5
109	Mate pair saturation report	Scaffolder	open		2009-07-02	2009-07-02	5
107	overlapStore by number of buckets, not memory	Overlapper	open		2009-06-10	2009-06-10	3
103	Enhance extractmessages	Assembly_analysis	open		2009-02-23	2009-02-23	1
102	require kmer to build	None	open	Brian Walenz	2009-02-20	2009-02-20	7
100	gatekeeper: fragment sampling	Gatekeeper	open		2008-12-05	2008-12-05	5
99	gatekeeper: exclude uid/iid	Gatekeeper	open		2008-12-05	2008-12-05	5
97	add sample spec files	None	open		2008-12-04	2008-12-04	8
95	cgw: coverageStat tuned for 10x	Scaffolder	open		2008-12-04	2008-12-04	5
92	BOG unitig checker	Unitigger	open	Brian Walenz	2008-11-18	2008-11-18	8
91	wiki: document the gatekeeper library features	Gatekeeper	open	Brian Walenz	2008-10-10	2008-12-04	8

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