Whole-Genome Shotgun Assembler Feature Requests

Brought to you by: brianwalenz, jasonmiller9704, mcschatz, skoren

Feature Requests Maximize Restore

# Sort A -> Z Sort Z -> A	Summary▾ Sort A -> Z Sort Z -> A	Milestone▾ Sort A -> Z Sort Z -> A Filter by Milestone	Status▾ Sort A -> Z Sort Z -> A Filter by Status	Owner▾ Sort A -> Z Sort Z -> A Filter by Owner	Created▾ Sort A -> Z Sort Z -> A	Updated▾ Sort A -> Z Sort Z -> A	Priority▾ Sort A -> Z Sort Z -> A
38	Add options to reduce cgw logging	Scaffolder	open		2006-03-16	2008-07-29	1
35	binary store compatibility	Portability	open	Brian Walenz	2006-03-14	2008-10-08	1
34	A greedy assembler	Unitigger	open		2006-03-09	2006-03-09	3
33	Add CE statistics to QC report	Assembly_analysis	open		2006-03-09	2008-07-29	5
32	Add TAMPA to pipeline	Assembly_analysis	open		2006-03-09	2006-03-09	5
31	Explain unused mates	Assembly_analysis	open		2006-03-09	2006-03-09	5
30	Explain unused fragments	Assembly_analysis	open		2006-03-09	2006-03-09	5
29	Screen 3rd party sequence for problems	Gatekeeper	open		2006-03-09	2006-03-09	5
28	Add DPI to QC	Assembly_analysis	open		2006-03-09	2008-07-29	5
26	QC should count all mates, not trust cgw	Assembly_analysis	open		2006-03-09	2008-08-20	3
25	Plot the distribution of unitg A-stats	Assembly_analysis	open		2006-03-09	2006-03-09	5
24	Graph polymorphism index	Assembly_analysis	open		2006-03-09	2006-03-09	5
23	Generalize N50 scaffold statistic	Assembly_analysis	open		2006-03-09	2006-03-09	5
22	Generalize N50 contig statistic	Assembly_analysis	open		2006-03-09	2006-03-09	5
21	Where did my repeat-reads go?	Assembly_analysis	open		2006-03-09	2006-03-09	5
20	Estimate library self-similarity	Overlapper	open	Sergey Koren	2006-03-09	2008-08-21	5
19	CGW reports negative gap when alignment fails	Scaffolder	open		2006-03-09	2008-08-21	5
18	Sequence gap report	Scaffolder	open	Jason Rafe Miller	2006-03-09	2008-08-21	6
14	Option to make cgw walk into repeat gaps	Scaffolder	open		2006-03-09	2006-03-15	5
13	Catalog of utilities outside main pipeline	None	open		2006-03-09	2006-03-09	2
12	Document terminator inputs and outputs	Terminator	open		2006-03-09	2006-03-09	2
11	Document cgw inputs and outputs	Scaffolder	open		2006-03-09	2006-03-09	2
10	Document cns inputs and outputs	Consensus	open		2006-03-09	2006-03-09	2
9	Document unitigger inputs and outputs	Unitigger	open		2006-03-09	2006-03-09	2
8	Document ovl inputs and outputs	Overlapper	open		2006-03-09	2006-03-09	2

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