USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

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added	/trunk/Source/util/bio/seq
added	/trunk/Source/util/bio/seq/BinaryBooleanReaderWriter.java
added	/trunk/Source/util/bio/seq/BisulfiteConvertFastas.java
added	/trunk/Source/util/bio/seq/ConcatinateFastas.java
added	/trunk/Source/util/bio/seq/ConvertFasta2GCBarGraph.java
added	/trunk/Source/util/bio/seq/ConvertFasta2GCBoolean.java
added	/trunk/Source/util/bio/seq/ConvertFasta2RealSeqBoolean.java
added	/trunk/Source/util/bio/seq/ConvertFastaA2G.java
added	/trunk/Source/util/bio/seq/ConvertFastqA2G.java
added	/trunk/Source/util/bio/seq/Fasta2Prb.java
added	/trunk/Source/util/bio/seq/FetchIndexedSequence.java
added	/trunk/Source/util/bio/seq/IndexFastas.java
added	/trunk/Source/util/bio/seq/IndexRegions.java
added	/trunk/Source/util/bio/seq/IndexedSequence.java
added	/trunk/Source/util/bio/seq/LowerCase2Xs.java
added	/trunk/Source/util/bio/seq/MakeSpliceJunctionFasta.java
added	/trunk/Source/util/bio/seq/MakeTranscriptome.java
added	/trunk/Source/util/bio/seq/MaskExonsInFastaFiles.java
added	/trunk/Source/util/bio/seq/MaskRegionsInFastaFiles.java
added	/trunk/Source/util/bio/seq/OligoTiler.java
added	/trunk/Source/util/bio/seq/ParseSeqsFromUCSCGeneTable.java
added	/trunk/Source/util/bio/seq/Seq.java
added	/trunk/Source/util/bio/seq/WordCountFastas.java
added	/trunk/Source/util/bio/seq/package.html
added	/trunk/Source/util/bio/seq/splice

/trunk/Source/util/bio/seq

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/trunk/Source/util/bio/seq/BinaryBooleanReaderWriter.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/BisulfiteConvertFastas.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConcatinateFastas.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConvertFasta2GCBarGraph.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConvertFasta2GCBoolean.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConvertFasta2RealSeqBoolean.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConvertFastaA2G.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ConvertFastqA2G.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/Fasta2Prb.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/FetchIndexedSequence.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/IndexFastas.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/IndexRegions.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/IndexedSequence.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/LowerCase2Xs.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/MakeSpliceJunctionFasta.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/MakeTranscriptome.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/MaskExonsInFastaFiles.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/MaskRegionsInFastaFiles.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/OligoTiler.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/ParseSeqsFromUCSCGeneTable.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/Seq.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/WordCountFastas.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/package.html Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/splice

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