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SNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve highly accurate genotype calling and phasing in an efficient way.
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BSD License, MIT LicenseFollow SNPTools
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Thanks for Snptools, it's excellent!
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Hey. My output of pileup are C2.sorted.bam.edb and C6.sorted.bam.edb The version of reference is Saccharomyces cerevisiae EF4.66 The list file is /home/bo/program/snptools/C2.sorted.bam.ebd /home/bo/program/snptools/C6.sorted.bam.ebd The command line about varisite is ./varisite list.txt chr /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa The fault information is binding 2 groups 1 loading /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa fail to read /home/bo/program/snptools/C2.sorted.bam.ebd fail to read /home/bo/program/snptools/C6.sorted.bam.ebd Segmentation fault