Re: [Sgems-users] Segmentation Fault when running simulation

[nico r. <nic...@gm...>]

I totally agree, there are a lot of checks that should be added to make the
algorithms more robust to input errors. But it's always more exciting to
develop new features than code input checks...
If you'd like to volunteer your help... J


On Thu, Jun 5, 2008 at 3:57 PM, Kevin Barnhart <kba...@mi...> wrote:

> Ah, stupid me.  Based on the gdb backtrace I see the problem:
>
> Program received signal SIGSEGV, Segmentation fault.
> [Switching to Thread 47439421855088 (LWP 31472)]
> 0x00002b2552b3edc1 in geostat_utils::init_secondary_neighborhood
> (type=geostat_utils::FULL, hdata_grid=0x0, secondary_prop=0x0,
>   parameters=0xe2c690, errors=0x7fff591eb4e0, max_size_tag=@0x7fff591eaf60,
> ellipsoid_tag=@0x7fff591eaf50, C22_tag=@0x7fff591eaf40)
>   at utilities.cpp:535
> 535           sec_neighborhood = hdata_grid->neighborhood( ranges, angles,
> &C22 );
>
>
> I've forgotten to define the secondary information appropriately.  Would be
> nice if the program caught this sort of idiocy, though...
>
> I'll continue slightly smarter.  Slightly.
>
> Kevin
>
> nico remy wrote:
>
>> It looks like you compiled sgems in debug mode (you're getting all the
>> debug output). Can you run a backtrace to see more precisely in what
>> function it crashed?
>> Thanks
>>
>> On Thu, Jun 5, 2008 at 2:34 PM, Kevin Barnhart <kba...@mi...<mailto:
>> kba...@mi...>> wrote:
>>
>>    I'm getting a segmentation fault when I try to generate a gaussian
>>    instance.  I'm guessing that it may be related to some of the Qt
>>    errors that I'm getting.  My output is attached.  Happy to provide
>>    any other details.  If I don't hear from anyone I'll probably pull
>>    down the CVS version of S-Gems since the release versions of Gstl
>>    and Simvoleon had many problems, but these issues seemed to be
>>    fixed in the latest CVS snapshot.
>>
>>    Thanks for any guidance.
>>
>>    Kevin
>>
>>    kbarnhar@calibrator:~/GeMS/SGeMS-2.0/bin/linux$ ./s-gems
>>    X Error: BadDevice, invalid or uninitialized input device 156
>>     Major opcode:  145
>>     Minor opcode:  3
>>     Resource id:  0x0
>>    Failed to open device
>>    X Error: BadDevice, invalid or uninitialized input device 156
>>     Major opcode:  145
>>     Minor opcode:  3
>>     Resource id:  0x0
>>    Failed to open device
>>    project.cpp:51  destroying Project_view...    still 0 references
>>    project.cpp:51  destroying Project_view...    still 0 references
>>    project.cpp:51  destroying Project_view...    still 0 references
>>    project.cpp:51  destroying Project_view...    still 0 references
>>    appli/qt_algo_control_panel.cpp:212  setting-up the algo selector
>>
>>
>>    Coin info in glglue_allow_newer_opengl():
>>
>>    Features of OpenGL version > 1.0 has been
>>    disabled, due to the use of a remote display.
>>
>>    This is so because many common OpenGL drivers
>>    have problems in this regard.
>>
>>    To force full OpenGL use, set the environment
>>    variable COIN_FULL_INDIRECT_RENDERING=1 and re-run the application.
>>
>>    If you don't want this message displayed again,
>>    set the environment variable COIN_DONT_INFORM_INDIRECT_RENDERING=1.
>>
>>    project.cpp:151  LoadProject took 0ms to initialize
>>    project.cpp:151  LoadObjectFromFile took 0ms to initialize
>>    project.cpp:156  LoadObjectFromFile took 4ms to run
>>    project.cpp:151  LoadObjectFromFile took 0ms to initialize
>>    project.cpp:156  LoadObjectFromFile took 20ms to run
>>    project.cpp:151  LoadObjectFromFile took 0ms to initialize
>>    project.cpp:156  LoadObjectFromFile took 4ms to run
>>    project.cpp:156  LoadProject took 31ms to run
>>    appli/qt_algo_control_panel.cpp:899  generating interface for algo
>>    cosgsim
>>    utils/qwidget_value_collector.cpp:186  setting widgets values
>>    utils/qwidget_value_collector.cpp:214  dealing with node "algorithm"
>>    utils/qwidget_value_collector.cpp:222  No widget called
>>    "algorithm" could be found...
>>    ... skipping
>>    utils/qwidget_value_collector.cpp:214  dealing with node "Grid_Name"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    GridSelector found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Grid_Name value="fivemgrid" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Property_Name"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QLineEdit found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Property_Name value="cosgsim" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Nb_Realizations"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QSpinBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Nb_Realizations value="1" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node "Seed"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QSpinBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "  <Seed
>>    value="14071789" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Kriging_Type"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QComboBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Kriging_Type value="Simple Kriging (SK)" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Cokriging_Type"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QComboBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Cokriging_Type value="Full Cokriging" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Primary_Harddata_Grid"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    GridSelector found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Primary_Harddata_Grid value="flowlnk" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Primary_Variable"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    SinglePropertySelector found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Primary_Variable value="k" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Assign_Hard_Data"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QCheckBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Assign_Hard_Data value="1" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Max_Conditioning_Data_1"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QSpinBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Max_Conditioning_Data_1 value="50" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Search_Ellipsoid_1"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    EllipsoidInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Search_Ellipsoid_1 value="100 99 15
>>    0 0 0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Transform_Primary_Variable"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QCheckBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Transform_Primary_Variable value="0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Secondary_Harddata_Grid"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    GridSelector found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Secondary_Harddata_Grid value="" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Secondary_Variable"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    SinglePropertySelector found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Secondary_Variable value="" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Max_Conditioning_Data_2"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QSpinBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Max_Conditioning_Data_2 value="0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Search_Ellipsoid_2"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    EllipsoidInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Search_Ellipsoid_2 value="3 2 1
>>    0 0 0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Transform_Secondary_Variable"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QCheckBox found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Transform_Secondary_Variable value="0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Variogram_C11"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    VariogramInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Variogram_C11 nugget="0" structures_count="1" >
>>       <structure_1 contribution="1" type="Exponential" >
>>         <ranges medium="12.8" min="1.6" max="12.8" />
>>         <angles x="0" y="0" z="0" />
>>       </structure_1>
>>     </Variogram_C11>
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Variogram_C22"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    VariogramInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Variogram_C22 nugget="0" structures_count="0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "Variogram_C12"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    VariogramInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Variogram_C12 nugget="0" structures_count="0" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node "Correl_Z1Z2"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QLineEdit found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <Correl_Z1Z2 value="" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "MM2_Correl_Z1Z2"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    QLineEdit found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <MM2_Correl_Z1Z2 value="" />
>>    "
>>    utils/qwidget_value_collector.cpp:214  dealing with node
>>    "MM2_Variogram_C22"
>>    utils/qwidget_value_collector.cpp:264  accessor for widget
>>    VariogramInput found
>>    utils/qwidget_value_collector.cpp:273  setting value: "
>>     <MM2_Variogram_C22 nugget="0" structures_count="1" >
>>       <structure_1 contribution="0" type="Spherical" >
>>         <ranges medium="0" min="0" max="0" />
>>         <angles x="0" y="0" z="0" />
>>       </structure_1>
>>     </MM2_Variogram_C22>
>>    "
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQTabWidget.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQTabWidget.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQTabWidget.so
>>    manager.cpp:340  No factory method to create type QTabWidget
>>    Interface .../QTabWidget could not be created
>>
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQWidgetStack.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidgetStack.soinitin
>>    library
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidgetStack.so
>>    manager.cpp:340  No factory method to create type QWidgetStack
>>    Interface .../QWidgetStack could not be created
>>
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQWidgetStackPrivate::Invisible.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidgetStackPrivate::Invisible.soinitin
>>    library
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidgetStackPrivate::Invisible.so
>>    manager.cpp:340  No factory method to create type
>>    QWidgetStackPrivate::Invisible
>>    Interface .../QWidgetStackPrivate::Invisible could not be created
>>
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQWidget.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidget.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQWidget.so
>>    manager.cpp:340  No factory method to create type QWidget
>>    Interface .../QWidget could not be created
>>
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQGroupBox.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQGroupBox.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQGroupBox.so
>>    manager.cpp:340  No factory method to create type QGroupBox
>>    Interface .../QGroupBox could not be created
>>
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQLabel.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQLabel.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQLabel.so
>>    manager.cpp:340  No factory method to create type QLabel
>>    Interface .../QLabel could not be created
>>
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibGsTLGroupBox.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libGsTLGroupBox.soinitin
>>    library
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libGsTLGroupBox.so
>>    manager.cpp:340  No factory method to create type GsTLGroupBox
>>    Interface .../GsTLGroupBox could not be created
>>
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQTabBar.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQTabBar.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQTabBar.so
>>    manager.cpp:340  No factory method to create type QTabBar
>>    Interface .../QTabBar could not be created
>>
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/liblibQToolButton.so:
>>    cannot open shared object file: No such file or directory
>>    manager.cpp:234  Can't find function
>>
>>  /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQToolButton.soinitin
>>    library
>>    /home/kbarnhar/GeMS/SGeMS-2.0/plugins/QTaccessors/xml/libQToolButton.so
>>    manager.cpp:340  No factory method to create type QToolButton
>>    Interface .../QToolButton could not be created
>>
>>    appli/qt_algo_control_panel.cpp:531  <parameters>  <algorithm
>>    name="cosgsim" />
>>     <Grid_Name  value="fivemgrid"  />
>>     <Property_Name  value="cosgsim" />
>>     <Nb_Realizations  value="1" />
>>     <Seed  value="14071789" />
>>     <Kriging_Type  value="Simple Kriging (SK)"  />
>>     <Cokriging_Type  value="Full Cokriging"  />
>>     <Primary_Harddata_Grid  value="flowlnk"  />
>>     <Primary_Variable  value="k"  />
>>     <Assign_Hard_Data  value="1"  />
>>     <Max_Conditioning_Data_1  value="50" />
>>     <Search_Ellipsoid_1  value="100 99 15
>>    0 0 0" />
>>     <Transform_Primary_Variable  value="0"  />
>>     <Secondary_Harddata_Grid  value=""  />
>>     <Secondary_Variable  value=""  />
>>     <Max_Conditioning_Data_2  value="0" />
>>     <Search_Ellipsoid_2  value="3 2 1
>>    0 0 0" />
>>     <Transform_Secondary_Variable  value="0"  />
>>     <Variogram_C11  nugget="0" structures_count="1"  >
>>     <structure_1  contribution="1"  type="Exponential"   >
>>       <ranges max="12.8"  medium="12.8"  min="1.6"   />
>>       <angles x="0"  y="0"  z="0"   />
>>     </structure_1>
>>    </Variogram_C11>
>>     <Variogram_C22  nugget="0" structures_count="0"  >
>>    </Variogram_C22>
>>     <Variogram_C12  nugget="0" structures_count="0"  >
>>    </Variogram_C12>
>>    </parameters>
>>
>>
>>    project.cpp:151  RunGeostatAlgorithm took 1ms to initialize
>>    Segmentation fault (core dumped)
>>    kbarnhar@calibrator:~/GeMS/SGeMS-2.0/bin/linux$
>>
>>
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