SeqPig is a library for Apache Pig for the distributed analysis of large sequencing datasets. It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output.

For more information see the manual at http://seqpig.sourceforge.net/

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Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

Programming Language

Java

Registered

2012-03-08
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