SeqPig download | SourceForge.net

SeqPig is a library for Apache Pig for the distributed analysis of large sequencing datasets. It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output.

For more information see the manual at http://seqpig.sourceforge.net/

Project Activity

See All Activity >

Follow SeqPig

SeqPig Web Site

You Might Also Like

Tigerpaw One | Business Automation Software for SMBs Icon

Tigerpaw One | Business Automation Software for SMBs

Fed up with not having the time, money and resources to grow your business?

The only software you need to increase cash flow, optimize resource utilization, and take control of your assets and inventory.

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of SeqPig!

Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

Programming Language

Registered

2012-03-08

Report inappropriate content

Recommended Projects

Seal
A toolkit for distributed processing of HT sequencing data.
CloudBurst
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. The command line tools of Hadoop-BAM should be understandable to all users, but they are limited in scope. See the SeqPig project for a higher-level interface to the file formats supported by Hadoop-BAM: http://seqpig.sourceforge.net See Seal for Hadoop-based read alignment tools, Seal: http://biodoop-seal.sourceforge.net