Looking for the latest version? Download seqpig_0.6.tar.gz (658.6 kB)
Name Modified Size Downloads / Week Status
seqpig_0.6.tar.gz 2016-08-11 658.6 kB 0
README.txt 2016-08-11 1.1 kB 0
seqpig_0.5.tar.gz 2013-07-16 3.6 MB 0
seqpig_0.4.tar.gz 2013-01-05 2.6 MB 0
seqpig_0.3.tar.gz 2012-09-28 2.1 MB 0
seqpig_0.2.tar.gz 2012-09-20 2.1 MB 0
seqpig_0.1.tar.gz 2012-06-01 2.2 MB 0
Totals: 7 Items   13.2 MB
SeqPig is a library of import and export functions for file formats commonly used in bioinformatics for Apache Pig. Additionally, it provides a collection of Pig user-defined functions (UDF's) that allow for processing of aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output and FASTA input. It is built on top of the Hadoop-BAM library. Fore more information see http://seqpig.sourceforge.net/ and the documentation that comes with the release. Releases of SeqPig come bundled with Picard/Samtools, which were developed at the Wellcome Trust Sanger Institute, and Biodoop/Seal, which were developed at the Center for Advanced Studies, Research and Development in Sardinia. See http://samtools.sourceforge.net/ http://biodoop-seal.sourceforge.net/ Installation with precompiled Seal library > mvn install:install-file -Dfile=lib/seal-0.4.0-with-hadoop-bam-7.4.0.jar -DgroupId=it.crs4 -DartifactId=seal -Dversion=0.4.0-with-hadoop-bam-7.4.0 -Dpackaging=jar -DgeneratePom=true > mvn package -DskipTests
Source: README.txt, updated 2016-08-11

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