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From: Lucian S. <luc...@gm...> - 2016-08-27 20:32:01
|
I'll be there in person! Let's keep the schedule as it is for now. On Aug 27, 2016 12:34 PM, "Chris Myers" <my...@ec...> wrote: > Perhaps but isn’t L3V2 pretty set at this point. Isn’t this more of an > information session? It’s up to you. I’m not sure we will keep the arrays > breakout. > > So, are you dialing in or going to be in Newcastle? > > Chris > > On Aug 26, 2016, at 11:30 PM, Lucian Smith <luc...@gm...> > wrote: > > Ha! The L3v2 session should probably come at the beginning of the week, > since I anticipate/hope there'll be followup discussion for the rest of the > conference. Maybe that'll just be a good time to catch up with the SED-ML > group, since that session should *also* probably come near the beginning of > the week, for the same reason. > > Unfortunately, Herbert ran out of funding for me, so I only have volunteer > time to work on Antimony at this point, which is going to mostly have to > focus on bugfixing or updating to new OS versions, etc. Maybe someday! > It's the same reason I've had zero time to work on anything SED-ML related, > too, unfortunately. > > -Lucian > > On Fri, Aug 26, 2016 at 9:49 PM, Chris Myers <my...@ec...> wrote: > >> You could swap SBML L3V2 into the slot currently with SBML >> Arrays/Dynamic. We can cancel that session as it was mostly going to be >> another attempt to convince you to hack it into Antimony :-). Would that >> work? >> >> Are you going to be in Newcastle? >> >> Chris >> >> On Aug 26, 2016, at 5:44 PM, Lucian Smith <luc...@gm...> >> wrote: >> >> I'm not sure if there's a good way to fix this, but currently, both SBML >> L3v2 and SED-ML L1v3 sessions are happening at the same time on Tuesday. >> If possible, I would have liked to attend both, but I can catch up later >> with the SED-ML group if need be. >> >> -Lucian >> >> On Tue, Aug 23, 2016 at 1:59 PM, Paolo Zuliani < >> pao...@ne...> wrote: >> >>> Dear all, >>> >>> The DRAFT agenda is available here http://co.mbine.org/events/COM >>> BINE_2016/agenda >>> >>> Tomorrow I'll set the delegate page up. >>> >>> Thanks, >>> Paolo >>> >>> >-----Original Message----- >>> >From: Chris Myers [mailto:my...@ec...] >>> >Sent: 22 August 2016 16:45 >>> >To: Paolo Zuliani >>> >Cc: All SBML Editors past and present; The SBGN Editors internal >>> mailing list; >>> >Anil Wipat; Robert Sidney Cox III; com...@go...; >>> sbol- >>> >ed...@go...; sed...@li... >>> >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >>> > >>> >Thanks. Probably we can post a link to the document as a tentative >>> schedule. >>> > >>> >Also, could you list the registered attendees on the website? You can >>> see >>> >how I did it last year on my page. I updated every few days to make >>> sure >>> >people could see an updated list of who is coming. Did you ever find >>> Martin’s >>> >registration? We need to make sure we are not losing any. >>> > >>> >Thanks, >>> > >>> >Chris >>> > >>> >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani < >>> pao...@ne...> >>> >wrote: >>> >> >>> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so >>> now we >>> >have a full program - updated schedule attached. >>> >> >>> >> Thanks, >>> >> Paolo >>> >> >>> >> >>> >> -----Original Message----- >>> >> From: Chris Myers [mailto:my...@ec...] >>> >> Sent: 19 August 2016 14:00 >>> >> To: All SBML Editors past and present <all...@ca...> >>> >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors >>> >internal mailing list <sbg...@li...>; Anil Wipat >>> ><ani...@ne...>; Robert Sidney Cox III >>> ><si...@ce...>; com...@go...; >>> >sbo...@go...; sed...@li... >>> >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >>> >> >>> >> Hi, >>> >> >>> >> I’ve added the SED-ML sessions, and I’ve made a few other changes >>> based >>> >on other constraints that I’m aware of. We are still missing SBGN >>> sessions. >>> >Falk or any of the SBGN editors want to suggest what to add for these? >>> Also, >>> >all group editors should provide leaders for each breakout session. >>> >> >>> >> Comments? >>> >> >>> >> Chris >>> >> >>> >> -- >>> >> You received this message because you are subscribed to the Google >>> >Groups "COMBINE coordination" group. >>> >> To unsubscribe from this group and stop receiving emails from it, >>> send an >>> >email to com...@go.... >>> >> To post to this group, send an email to >>> com...@go.... >>> >> To view this discussion on the web, visit >>> >https://groups.google.com/d/msgid/combine- >>> >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e >>> >urprd07.prod.outlook.com. >>> >> For more options, visit https://groups.google.com/d/optout. >>> >> <COMBINE 2016_Schedule.xlsx> >>> >>> ------------------------------------------------------------ >>> ------------------ >>> _______________________________________________ >>> sed-ml-editors mailing list >>> sed...@li... >>> https://lists.sourceforge.net/lists/listinfo/sed-ml-editors >>> >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "COMBINE coordination" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to com...@go.... >> To post to this group, send email to com...@go.... >> To view this discussion on the web, visit https://groups.google.com/d/ms >> gid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3 >> w6FWSfwkVUA%40mail.gmail.com >> <https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> For more options, visit https://groups.google.com/d/optout. >> >> >> > > -- > You received this message because you are subscribed to the Google Groups > "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to com...@go.... > To post to this group, send email to com...@go.... > To view this discussion on the web, visit https://groups.google.com/d/ > msgid/combine-coord/CAHLmBr27NZhLqRGqXm5aFPuFgnX7L > tk-82UaEkW0mvN0o9YFXQ%40mail.gmail.com > <https://groups.google.com/d/msgid/combine-coord/CAHLmBr27NZhLqRGqXm5aFPuFgnX7Ltk-82UaEkW0mvN0o9YFXQ%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > For more options, visit https://groups.google.com/d/optout. > > > |
|
From: Chris M. <my...@ec...> - 2016-08-27 19:34:53
|
Perhaps but isn’t L3V2 pretty set at this point. Isn’t this more of an information session? It’s up to you. I’m not sure we will keep the arrays breakout. So, are you dialing in or going to be in Newcastle? Chris > On Aug 26, 2016, at 11:30 PM, Lucian Smith <luc...@gm...> wrote: > > Ha! The L3v2 session should probably come at the beginning of the week, since I anticipate/hope there'll be followup discussion for the rest of the conference. Maybe that'll just be a good time to catch up with the SED-ML group, since that session should *also* probably come near the beginning of the week, for the same reason. > > Unfortunately, Herbert ran out of funding for me, so I only have volunteer time to work on Antimony at this point, which is going to mostly have to focus on bugfixing or updating to new OS versions, etc. Maybe someday! It's the same reason I've had zero time to work on anything SED-ML related, too, unfortunately. > > -Lucian > > On Fri, Aug 26, 2016 at 9:49 PM, Chris Myers <my...@ec... <mailto:my...@ec...>> wrote: > You could swap SBML L3V2 into the slot currently with SBML Arrays/Dynamic. We can cancel that session as it was mostly going to be another attempt to convince you to hack it into Antimony :-). Would that work? > > Are you going to be in Newcastle? > > Chris > >> On Aug 26, 2016, at 5:44 PM, Lucian Smith <luc...@gm... <mailto:luc...@gm...>> wrote: >> >> I'm not sure if there's a good way to fix this, but currently, both SBML L3v2 and SED-ML L1v3 sessions are happening at the same time on Tuesday. If possible, I would have liked to attend both, but I can catch up later with the SED-ML group if need be. >> >> -Lucian >> >> On Tue, Aug 23, 2016 at 1:59 PM, Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>> wrote: >> Dear all, >> >> The DRAFT agenda is available here http://co.mbine.org/events/COMBINE_2016/agenda <http://co.mbine.org/events/COMBINE_2016/agenda> >> >> Tomorrow I'll set the delegate page up. >> >> Thanks, >> Paolo >> >> >-----Original Message----- >> >From: Chris Myers [mailto:my...@ec... <mailto:my...@ec...>] >> >Sent: 22 August 2016 16:45 >> >To: Paolo Zuliani >> >Cc: All SBML Editors past and present; The SBGN Editors internal mailing list; >> >Anil Wipat; Robert Sidney Cox III; com...@go... <mailto:com...@go...>; sbol- >> >ed...@go... <mailto:ed...@go...>; sed...@li... <mailto:sed...@li...> >> >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> > >> >Thanks. Probably we can post a link to the document as a tentative schedule. >> > >> >Also, could you list the registered attendees on the website? You can see >> >how I did it last year on my page. I updated every few days to make sure >> >people could see an updated list of who is coming. Did you ever find Martin’s >> >registration? We need to make sure we are not losing any. >> > >> >Thanks, >> > >> >Chris >> > >> >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>> >> >wrote: >> >> >> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we >> >have a full program - updated schedule attached. >> >> >> >> Thanks, >> >> Paolo >> >> >> >> >> >> -----Original Message----- >> >> From: Chris Myers [mailto:my...@ec... <mailto:my...@ec...>] >> >> Sent: 19 August 2016 14:00 >> >> To: All SBML Editors past and present <all...@ca... <mailto:all...@ca...>> >> >> Cc: Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>>; The SBGN Editors >> >internal mailing list <sbg...@li... <mailto:sbg...@li...>>; Anil Wipat >> ><ani...@ne... <mailto:ani...@ne...>>; Robert Sidney Cox III >> ><si...@ce... <mailto:si...@ce...>>; com...@go... <mailto:com...@go...>; >> >sbo...@go... <mailto:sbo...@go...>; sed...@li... <mailto:sed...@li...> >> >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> >> >> >> Hi, >> >> >> >> I’ve added the SED-ML sessions, and I’ve made a few other changes based >> >on other constraints that I’m aware of. We are still missing SBGN sessions. >> >Falk or any of the SBGN editors want to suggest what to add for these? Also, >> >all group editors should provide leaders for each breakout session. >> >> >> >> Comments? >> >> >> >> Chris >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> >Groups "COMBINE coordination" group. >> >> To unsubscribe from this group and stop receiving emails from it, send an >> >email to com...@go... <mailto:combine-coord%2Bu...@go...>. >> >> To post to this group, send an email to com...@go... <mailto:com...@go...>. >> >> To view this discussion on the web, visit >> >https://groups.google.com/d/msgid/combine- <https://groups.google.com/d/msgid/combine-> >> >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e >> >urprd07.prod.outlook.com <http://urprd07.prod.outlook.com/>. >> >> For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. >> >> <COMBINE 2016_Schedule.xlsx> >> >> ------------------------------------------------------------------------------ >> _______________________________________________ >> sed-ml-editors mailing list >> sed...@li... <mailto:sed...@li...> >> https://lists.sourceforge.net/lists/listinfo/sed-ml-editors <https://lists.sourceforge.net/lists/listinfo/sed-ml-editors> >> >> >> -- >> You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. >> To unsubscribe from this group and stop receiving emails from it, send an email to com...@go... <mailto:com...@go...>. >> To post to this group, send email to com...@go... <mailto:com...@go...>. >> To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com <https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com?utm_medium=email&utm_source=footer>. >> For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. > > > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go... <mailto:com...@go...>. > To post to this group, send email to com...@go... <mailto:com...@go...>. > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/CAHLmBr27NZhLqRGqXm5aFPuFgnX7Ltk-82UaEkW0mvN0o9YFXQ%40mail.gmail.com <https://groups.google.com/d/msgid/combine-coord/CAHLmBr27NZhLqRGqXm5aFPuFgnX7Ltk-82UaEkW0mvN0o9YFXQ%40mail.gmail.com?utm_medium=email&utm_source=footer>. > For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. |
|
From: Lucian S. <luc...@gm...> - 2016-08-27 05:30:25
|
Ha! The L3v2 session should probably come at the beginning of the week, since I anticipate/hope there'll be followup discussion for the rest of the conference. Maybe that'll just be a good time to catch up with the SED-ML group, since that session should *also* probably come near the beginning of the week, for the same reason. Unfortunately, Herbert ran out of funding for me, so I only have volunteer time to work on Antimony at this point, which is going to mostly have to focus on bugfixing or updating to new OS versions, etc. Maybe someday! It's the same reason I've had zero time to work on anything SED-ML related, too, unfortunately. -Lucian On Fri, Aug 26, 2016 at 9:49 PM, Chris Myers <my...@ec...> wrote: > You could swap SBML L3V2 into the slot currently with SBML > Arrays/Dynamic. We can cancel that session as it was mostly going to be > another attempt to convince you to hack it into Antimony :-). Would that > work? > > Are you going to be in Newcastle? > > Chris > > On Aug 26, 2016, at 5:44 PM, Lucian Smith <luc...@gm...> > wrote: > > I'm not sure if there's a good way to fix this, but currently, both SBML > L3v2 and SED-ML L1v3 sessions are happening at the same time on Tuesday. > If possible, I would have liked to attend both, but I can catch up later > with the SED-ML group if need be. > > -Lucian > > On Tue, Aug 23, 2016 at 1:59 PM, Paolo Zuliani < > pao...@ne...> wrote: > >> Dear all, >> >> The DRAFT agenda is available here http://co.mbine.org/events/COM >> BINE_2016/agenda >> >> Tomorrow I'll set the delegate page up. >> >> Thanks, >> Paolo >> >> >-----Original Message----- >> >From: Chris Myers [mailto:my...@ec...] >> >Sent: 22 August 2016 16:45 >> >To: Paolo Zuliani >> >Cc: All SBML Editors past and present; The SBGN Editors internal mailing >> list; >> >Anil Wipat; Robert Sidney Cox III; com...@go...; sbol- >> >ed...@go...; sed...@li... >> >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> > >> >Thanks. Probably we can post a link to the document as a tentative >> schedule. >> > >> >Also, could you list the registered attendees on the website? You can >> see >> >how I did it last year on my page. I updated every few days to make sure >> >people could see an updated list of who is coming. Did you ever find >> Martin’s >> >registration? We need to make sure we are not losing any. >> > >> >Thanks, >> > >> >Chris >> > >> >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani < >> pao...@ne...> >> >wrote: >> >> >> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so >> now we >> >have a full program - updated schedule attached. >> >> >> >> Thanks, >> >> Paolo >> >> >> >> >> >> -----Original Message----- >> >> From: Chris Myers [mailto:my...@ec...] >> >> Sent: 19 August 2016 14:00 >> >> To: All SBML Editors past and present <all...@ca...> >> >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors >> >internal mailing list <sbg...@li...>; Anil Wipat >> ><ani...@ne...>; Robert Sidney Cox III >> ><si...@ce...>; com...@go...; >> >sbo...@go...; sed...@li... >> >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> >> >> >> Hi, >> >> >> >> I’ve added the SED-ML sessions, and I’ve made a few other changes based >> >on other constraints that I’m aware of. We are still missing SBGN >> sessions. >> >Falk or any of the SBGN editors want to suggest what to add for these? >> Also, >> >all group editors should provide leaders for each breakout session. >> >> >> >> Comments? >> >> >> >> Chris >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> >Groups "COMBINE coordination" group. >> >> To unsubscribe from this group and stop receiving emails from it, send >> an >> >email to com...@go.... >> >> To post to this group, send an email to com...@go... >> . >> >> To view this discussion on the web, visit >> >https://groups.google.com/d/msgid/combine- >> >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e >> >urprd07.prod.outlook.com. >> >> For more options, visit https://groups.google.com/d/optout. >> >> <COMBINE 2016_Schedule.xlsx> >> >> ------------------------------------------------------------ >> ------------------ >> _______________________________________________ >> sed-ml-editors mailing list >> sed...@li... >> https://lists.sourceforge.net/lists/listinfo/sed-ml-editors >> > > > -- > You received this message because you are subscribed to the Google Groups > "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to com...@go.... > To post to this group, send email to com...@go.... > To view this discussion on the web, visit https://groups.google.com/d/ > msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3 > w6FWSfwkVUA%40mail.gmail.com > <https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > For more options, visit https://groups.google.com/d/optout. > > > |
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From: Chris M. <my...@ec...> - 2016-08-27 04:49:38
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You could swap SBML L3V2 into the slot currently with SBML Arrays/Dynamic. We can cancel that session as it was mostly going to be another attempt to convince you to hack it into Antimony :-). Would that work? Are you going to be in Newcastle? Chris > On Aug 26, 2016, at 5:44 PM, Lucian Smith <luc...@gm...> wrote: > > I'm not sure if there's a good way to fix this, but currently, both SBML L3v2 and SED-ML L1v3 sessions are happening at the same time on Tuesday. If possible, I would have liked to attend both, but I can catch up later with the SED-ML group if need be. > > -Lucian > > On Tue, Aug 23, 2016 at 1:59 PM, Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>> wrote: > Dear all, > > The DRAFT agenda is available here http://co.mbine.org/events/COMBINE_2016/agenda <http://co.mbine.org/events/COMBINE_2016/agenda> > > Tomorrow I'll set the delegate page up. > > Thanks, > Paolo > > >-----Original Message----- > >From: Chris Myers [mailto:my...@ec... <mailto:my...@ec...>] > >Sent: 22 August 2016 16:45 > >To: Paolo Zuliani > >Cc: All SBML Editors past and present; The SBGN Editors internal mailing list; > >Anil Wipat; Robert Sidney Cox III; com...@go... <mailto:com...@go...>; sbol- > >ed...@go... <mailto:ed...@go...>; sed...@li... <mailto:sed...@li...> > >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > > >Thanks. Probably we can post a link to the document as a tentative schedule. > > > >Also, could you list the registered attendees on the website? You can see > >how I did it last year on my page. I updated every few days to make sure > >people could see an updated list of who is coming. Did you ever find Martin’s > >registration? We need to make sure we are not losing any. > > > >Thanks, > > > >Chris > > > >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>> > >wrote: > >> > >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we > >have a full program - updated schedule attached. > >> > >> Thanks, > >> Paolo > >> > >> > >> -----Original Message----- > >> From: Chris Myers [mailto:my...@ec... <mailto:my...@ec...>] > >> Sent: 19 August 2016 14:00 > >> To: All SBML Editors past and present <all...@ca... <mailto:all...@ca...>> > >> Cc: Paolo Zuliani <pao...@ne... <mailto:pao...@ne...>>; The SBGN Editors > >internal mailing list <sbg...@li... <mailto:sbg...@li...>>; Anil Wipat > ><ani...@ne... <mailto:ani...@ne...>>; Robert Sidney Cox III > ><si...@ce... <mailto:si...@ce...>>; com...@go... <mailto:com...@go...>; > >sbo...@go... <mailto:sbo...@go...>; sed...@li... <mailto:sed...@li...> > >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > >> > >> Hi, > >> > >> I’ve added the SED-ML sessions, and I’ve made a few other changes based > >on other constraints that I’m aware of. We are still missing SBGN sessions. > >Falk or any of the SBGN editors want to suggest what to add for these? Also, > >all group editors should provide leaders for each breakout session. > >> > >> Comments? > >> > >> Chris > >> > >> -- > >> You received this message because you are subscribed to the Google > >Groups "COMBINE coordination" group. > >> To unsubscribe from this group and stop receiving emails from it, send an > >email to com...@go... <mailto:combine-coord%2Bu...@go...>. > >> To post to this group, send an email to com...@go... <mailto:com...@go...>. > >> To view this discussion on the web, visit > >https://groups.google.com/d/msgid/combine- <https://groups.google.com/d/msgid/combine-> > >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e > >urprd07.prod.outlook.com <http://urprd07.prod.outlook.com/>. > >> For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. > >> <COMBINE 2016_Schedule.xlsx> > > ------------------------------------------------------------------------------ > _______________________________________________ > sed-ml-editors mailing list > sed...@li... <mailto:sed...@li...> > https://lists.sourceforge.net/lists/listinfo/sed-ml-editors <https://lists.sourceforge.net/lists/listinfo/sed-ml-editors> > > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go... <mailto:com...@go...>. > To post to this group, send email to com...@go... <mailto:com...@go...>. > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com <https://groups.google.com/d/msgid/combine-coord/CAHLmBr37Gg%3D3gcqbPddJhY2yQ27WuxBqFT43bM3w6FWSfwkVUA%40mail.gmail.com?utm_medium=email&utm_source=footer>. > For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. |
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From: Lucian S. <luc...@gm...> - 2016-08-26 23:45:06
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I'm not sure if there's a good way to fix this, but currently, both SBML L3v2 and SED-ML L1v3 sessions are happening at the same time on Tuesday. If possible, I would have liked to attend both, but I can catch up later with the SED-ML group if need be. -Lucian On Tue, Aug 23, 2016 at 1:59 PM, Paolo Zuliani < pao...@ne...> wrote: > Dear all, > > The DRAFT agenda is available here http://co.mbine.org/events/ > COMBINE_2016/agenda > > Tomorrow I'll set the delegate page up. > > Thanks, > Paolo > > >-----Original Message----- > >From: Chris Myers [mailto:my...@ec...] > >Sent: 22 August 2016 16:45 > >To: Paolo Zuliani > >Cc: All SBML Editors past and present; The SBGN Editors internal mailing > list; > >Anil Wipat; Robert Sidney Cox III; com...@go...; sbol- > >ed...@go...; sed...@li... > >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > > >Thanks. Probably we can post a link to the document as a tentative > schedule. > > > >Also, could you list the registered attendees on the website? You can see > >how I did it last year on my page. I updated every few days to make sure > >people could see an updated list of who is coming. Did you ever find > Martin’s > >registration? We need to make sure we are not losing any. > > > >Thanks, > > > >Chris > > > >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani < > pao...@ne...> > >wrote: > >> > >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so > now we > >have a full program - updated schedule attached. > >> > >> Thanks, > >> Paolo > >> > >> > >> -----Original Message----- > >> From: Chris Myers [mailto:my...@ec...] > >> Sent: 19 August 2016 14:00 > >> To: All SBML Editors past and present <all...@ca...> > >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors > >internal mailing list <sbg...@li...>; Anil Wipat > ><ani...@ne...>; Robert Sidney Cox III > ><si...@ce...>; com...@go...; > >sbo...@go...; sed...@li... > >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > >> > >> Hi, > >> > >> I’ve added the SED-ML sessions, and I’ve made a few other changes based > >on other constraints that I’m aware of. We are still missing SBGN > sessions. > >Falk or any of the SBGN editors want to suggest what to add for these? > Also, > >all group editors should provide leaders for each breakout session. > >> > >> Comments? > >> > >> Chris > >> > >> -- > >> You received this message because you are subscribed to the Google > >Groups "COMBINE coordination" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an > >email to com...@go.... > >> To post to this group, send an email to com...@go.... > >> To view this discussion on the web, visit > >https://groups.google.com/d/msgid/combine- > >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e > >urprd07.prod.outlook.com. > >> For more options, visit https://groups.google.com/d/optout. > >> <COMBINE 2016_Schedule.xlsx> > > ------------------------------------------------------------ > ------------------ > _______________________________________________ > sed-ml-editors mailing list > sed...@li... > https://lists.sourceforge.net/lists/listinfo/sed-ml-editors > |
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From: Paolo Z. <pao...@ne...> - 2016-08-26 15:02:22
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Dear all, Please find below the Call for Participation. Please distribute widely - many thanks in advance for your efforts! Paolo %%%%%%%%%%%%%%% == Call for Participation == COMBINE 2016: 7th Computational Modeling in Biology Network Workshop 19-24 September 2016, Newcastle upon Tyne, UK http://co.mbine.org/events/COMBINE_2016 *Full programme*: http://co.mbine.org/events/COMBINE_2016/agenda The "Computational Modeling in Biology" Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology and related fields. COMBINE 2016 will be a workshop-style event with oral presentations, posters, and breakout sessions. The five meeting days will include talks about the COMBINE standards and associated or related standardization efforts, as well as presentations of tools using these standards. Oral presentations have been selected from the submitted abstracts. In addition, poster sessions will allow people to inform each other about their software and other projects in a setting that fosters interaction and in-depth discussion. == IMPORTANT DATES == COMBINE Workshop: 19-23 September 2016 SBGN Workshop@COMBINE: 24 September 2016 == KEYNOTE SPEAKERS == - Alfonso Bueno-Orovio (Oxford) - Carole Goble (Manchester) - Martin Golebiewski (HITS gGmbH) - Sarah Keating (EMBL-EBI) - Dagmar Iber (ETH Zurich) - Andrew Millar (Edinburgh) - Chris J. Myers (Utah) - David Nickerson (Auckland) - Daryl Shanley (Newcastle) - Yujiang Wang (Newcastle) == REGISTRATION == Delegate registration fee: 195GBP (~ 230EUR, 260USD) Discounted rate for students: 145GBP (~ 170EUR, 195USD) Registration includes lunches, snacks, coffee and tea over the five days and the conference dinner on the 19th. Register here: http://co.mbine.org/events/COMBINE_2016#Registration == TOPICS OF INTEREST == Topics include, but are not limited to: - Data exchange and model standards for systems biology - Graphical notation standards for systems biology - Standards for sharing and analysing biological pathway data - Standards for computational biological models More on the COMBINE standards at http://co.mbine.org/standards == ACKNOWLEDGEMENTS == COMBINE 2016 is generously supported by: - Engineering and Physical Sciences Research Council (UK) [AUDACIOUS project EP/J004111/2] - Interdisciplinary Computing and Complex BioSystems Group (ICOS) - School of Computing Science, Newcastle University - National Science Foundation (USA) == LOCAL CHAIRS == Paolo Zuliani & Anil Wipat, ICOS Group, School of Computing Science, Newcastle University. == LOCAL ORGANISERS == Keith Flanagan & Claire Smith, ICOS Group, School of Computing Science, Newcastle University. == COMBINE COORDINATORS == Gary Bader (Toronto) Martin Golebiewski (Heidelberg) Michael Hucka (Caltech) Nicolas Le Novère (Babraham) Chris J. Myers (Utah) David Nickerson (Auckland) Falk Schreiber (Monash) Dagmar Waltemath (Rostock) |
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From: Paolo Z. <pao...@ne...> - 2016-08-26 11:12:35
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Quick update: - agenda http://co.mbine.org/events/COMBINE_2016/agenda - we now have 13 posters (notifications sent out) - I am preparing a Call for Participation If you are coming to COMBINE and haven't registered yet, please do so ASAP. Many thanks, Paolo |
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From: Moraru,Ion <mo...@uc...> - 2016-08-23 22:00:45
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I will likely attend, but not sure yet. I will sign up when the trip will be confirmed. Ion -----Original Message----- From: Augustin Luna [mailto:ca...@gm...] Sent: Tuesday, August 23, 2016 11:14 AM To: The SBGN Editors internal mailing list Cc: Anil Wipat; Robert Sidney Cox III; fal...@gm...; All SBML Editors past and present; com...@go...; sbo...@go...; sed...@li...; Chris Myers Subject: Re: [sed-ml-editors] [sbgn-editors] [all-sbml-editors] COMBINE 2016 draft schedule I'm signed up to attend and could potentially chair, but have no funds to go. I've reached out to people with no luck; let me know if any of you can think of other options for funding the trip. If I do not go to COMBINE, I'll likely be in NYC (a much cheaper trip) working with collaborators, but I'd like to settle the question soon. Augustin Luna On Tue, Aug 23, 2016 at 6:50 AM, Paolo Zuliani <pao...@ne...> wrote: > Martin wasn't registered - now he is. Yes, I'll put the schedule and attendees list up very soon. > > Thanks, > Paolo > > > -----Original Message----- > From: Chris Myers [mailto:my...@ec...] > Sent: 22 August 2016 16:45 > To: Paolo Zuliani <pao...@ne...> > Cc: All SBML Editors past and present <all...@ca...>; > The SBGN Editors internal mailing list > <sbg...@li...>; Anil Wipat > <ani...@ne...>; Robert Sidney Cox III > <si...@ce...>; com...@go...; > sbo...@go...; sed...@li... > Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > Thanks. Probably we can post a link to the document as a tentative schedule. > > Also, could you list the registered attendees on the website? You can see how I did it last year on my page. I updated every few days to make sure people could see an updated list of who is coming. Did you ever find Martin’s registration? We need to make sure we are not losing any. > > Thanks, > > Chris > >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne...> wrote: >> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. >> >> Thanks, >> Paolo >> >> >> -----Original Message----- >> From: Chris Myers [mailto:my...@ec...] >> Sent: 19 August 2016 14:00 >> To: All SBML Editors past and present <all...@ca...> >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors >> internal mailing list <sbg...@li...>; Anil >> Wipat <ani...@ne...>; Robert Sidney Cox III >> <si...@ce...>; com...@go...; >> sbo...@go...; sed...@li... >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> >> Hi, >> >> I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. >> >> Comments? >> >> Chris >> >> -- >> You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. >> To unsubscribe from this group and stop receiving emails from it, send an email to com...@go.... >> To post to this group, send an email to com...@go.... >> To view this discussion on the web, visit https://urldefense.proofpoint.com/v2/url?u=https-3A__groups.google.com_d_msgid_combine-2Dcoord_AM4PR07MB1332A36204421EF5F40F077DA9E80-2540AM4PR07MB1332.eurprd07.prod.outlook.com&d=CwIGaQ&c=EZxp_D7cDnouwj5YEFHgXuSKoUq2zVQZ_7Fw9yfotck&r=Uahi_Qsm5BuafcKS0wC-iw&m=plDPbESGJhuaD5toBLJyPtcS155PMOK145fcU6hvcnk&s=9v4rRDir3k7H9sFBI8n-H9hMsl1VfGOLWMiMZUm8O5A&e= . >> For more options, visit https://urldefense.proofpoint.com/v2/url?u=https-3A__groups.google.com_d_optout&d=CwIGaQ&c=EZxp_D7cDnouwj5YEFHgXuSKoUq2zVQZ_7Fw9yfotck&r=Uahi_Qsm5BuafcKS0wC-iw&m=plDPbESGJhuaD5toBLJyPtcS155PMOK145fcU6hvcnk&s=F7-xj0vyYPDya6PEwwenC2133Gpq9JduHc1iW1oZDjM&e= . >> <COMBINE 2016_Schedule.xlsx> > > ---------------------------------------------------------------------- > -------- _______________________________________________ > sbgn-editors mailing list > sbg...@li... > https://urldefense.proofpoint.com/v2/url?u=https-3A__lists.sourceforge > .net_lists_listinfo_sbgn-2Deditors&d=CwIGaQ&c=EZxp_D7cDnouwj5YEFHgXuSK > oUq2zVQZ_7Fw9yfotck&r=Uahi_Qsm5BuafcKS0wC-iw&m=plDPbESGJhuaD5toBLJyPtc > S155PMOK145fcU6hvcnk&s=fWeLysEzIYDTGd5c2r1mjPFwT3iqjRUke4ILoCUOysk&e= ------------------------------------------------------------------------------ _______________________________________________ sed-ml-editors mailing list sed...@li... https://urldefense.proofpoint.com/v2/url?u=https-3A__lists.sourceforge.net_lists_listinfo_sed-2Dml-2Deditors&d=CwIGaQ&c=EZxp_D7cDnouwj5YEFHgXuSKoUq2zVQZ_7Fw9yfotck&r=Uahi_Qsm5BuafcKS0wC-iw&m=plDPbESGJhuaD5toBLJyPtcS155PMOK145fcU6hvcnk&s=5WF2gsff84v_fURbjmZ9HvBjBYpm8X-dKBfynjbj3Gk&e= |
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From: Paolo Z. <pao...@ne...> - 2016-08-23 21:00:17
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Dear all, The DRAFT agenda is available here http://co.mbine.org/events/COMBINE_2016/agenda Tomorrow I'll set the delegate page up. Thanks, Paolo >-----Original Message----- >From: Chris Myers [mailto:my...@ec...] >Sent: 22 August 2016 16:45 >To: Paolo Zuliani >Cc: All SBML Editors past and present; The SBGN Editors internal mailing list; >Anil Wipat; Robert Sidney Cox III; com...@go...; sbol- >ed...@go...; sed...@li... >Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > >Thanks. Probably we can post a link to the document as a tentative schedule. > >Also, could you list the registered attendees on the website? You can see >how I did it last year on my page. I updated every few days to make sure >people could see an updated list of who is coming. Did you ever find Martin’s >registration? We need to make sure we are not losing any. > >Thanks, > >Chris > >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne...> >wrote: >> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we >have a full program - updated schedule attached. >> >> Thanks, >> Paolo >> >> >> -----Original Message----- >> From: Chris Myers [mailto:my...@ec...] >> Sent: 19 August 2016 14:00 >> To: All SBML Editors past and present <all...@ca...> >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors >internal mailing list <sbg...@li...>; Anil Wipat ><ani...@ne...>; Robert Sidney Cox III ><si...@ce...>; com...@go...; >sbo...@go...; sed...@li... >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> >> Hi, >> >> I’ve added the SED-ML sessions, and I’ve made a few other changes based >on other constraints that I’m aware of. We are still missing SBGN sessions. >Falk or any of the SBGN editors want to suggest what to add for these? Also, >all group editors should provide leaders for each breakout session. >> >> Comments? >> >> Chris >> >> -- >> You received this message because you are subscribed to the Google >Groups "COMBINE coordination" group. >> To unsubscribe from this group and stop receiving emails from it, send an >email to com...@go.... >> To post to this group, send an email to com...@go.... >> To view this discussion on the web, visit >https://groups.google.com/d/msgid/combine- >coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.e >urprd07.prod.outlook.com. >> For more options, visit https://groups.google.com/d/optout. >> <COMBINE 2016_Schedule.xlsx> |
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From: Augustin L. <ca...@gm...> - 2016-08-23 15:14:34
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I'm signed up to attend and could potentially chair, but have no funds to go. I've reached out to people with no luck; let me know if any of you can think of other options for funding the trip. If I do not go to COMBINE, I'll likely be in NYC (a much cheaper trip) working with collaborators, but I'd like to settle the question soon. Augustin Luna On Tue, Aug 23, 2016 at 6:50 AM, Paolo Zuliani <pao...@ne...> wrote: > Martin wasn't registered - now he is. Yes, I'll put the schedule and attendees list up very soon. > > Thanks, > Paolo > > > -----Original Message----- > From: Chris Myers [mailto:my...@ec...] > Sent: 22 August 2016 16:45 > To: Paolo Zuliani <pao...@ne...> > Cc: All SBML Editors past and present <all...@ca...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... > Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > Thanks. Probably we can post a link to the document as a tentative schedule. > > Also, could you list the registered attendees on the website? You can see how I did it last year on my page. I updated every few days to make sure people could see an updated list of who is coming. Did you ever find Martin’s registration? We need to make sure we are not losing any. > > Thanks, > > Chris > >> On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne...> wrote: >> >> Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. >> >> Thanks, >> Paolo >> >> >> -----Original Message----- >> From: Chris Myers [mailto:my...@ec...] >> Sent: 19 August 2016 14:00 >> To: All SBML Editors past and present <all...@ca...> >> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... >> Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule >> >> Hi, >> >> I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. >> >> Comments? >> >> Chris >> >> -- >> You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. >> To unsubscribe from this group and stop receiving emails from it, send an email to com...@go.... >> To post to this group, send an email to com...@go.... >> To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.eurprd07.prod.outlook.com. >> For more options, visit https://groups.google.com/d/optout. >> <COMBINE 2016_Schedule.xlsx> > > ------------------------------------------------------------------------------ > _______________________________________________ > sbgn-editors mailing list > sbg...@li... > https://lists.sourceforge.net/lists/listinfo/sbgn-editors |
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From: Paolo Z. <pao...@ne...> - 2016-08-23 10:50:31
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Martin wasn't registered - now he is. Yes, I'll put the schedule and attendees list up very soon. Thanks, Paolo -----Original Message----- From: Chris Myers [mailto:my...@ec...] Sent: 22 August 2016 16:45 To: Paolo Zuliani <pao...@ne...> Cc: All SBML Editors past and present <all...@ca...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule Thanks. Probably we can post a link to the document as a tentative schedule. Also, could you list the registered attendees on the website? You can see how I did it last year on my page. I updated every few days to make sure people could see an updated list of who is coming. Did you ever find Martin’s registration? We need to make sure we are not losing any. Thanks, Chris > On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne...> wrote: > > Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. > > Thanks, > Paolo > > > -----Original Message----- > From: Chris Myers [mailto:my...@ec...] > Sent: 19 August 2016 14:00 > To: All SBML Editors past and present <all...@ca...> > Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... > Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > Hi, > > I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. > > Comments? > > Chris > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go.... > To post to this group, send an email to com...@go.... > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.eurprd07.prod.outlook.com. > For more options, visit https://groups.google.com/d/optout. > <COMBINE 2016_Schedule.xlsx> |
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From: Lucian S. <luc...@gm...> - 2016-08-22 23:49:38
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I'll be there! And I also think it's fine for non-members to post directly to the editors list. -Lucian On Mon, Aug 22, 2016 at 3:46 PM, David Nickerson <dav...@gm...> wrote: > Hi all, > > Just to let you know that I think it should be fine for non-members to > post directly to the SED-ML editors list without needing moderation. I > think I have just changed this setting in the SF.net mailing list > configuration jungle. If we suddenly get flooded with spam, then we'll > have to try something different. > > Also, just checking who will be at COMBINE next month? Will it be > worth trying to organise an editors meeting at some point? > > Cheers, > David. > > ------------------------------------------------------------ > ------------------ > _______________________________________________ > sed-ml-editors mailing list > sed...@li... > https://lists.sourceforge.net/lists/listinfo/sed-ml-editors > |
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From: David N. <dav...@gm...> - 2016-08-22 22:47:02
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Hi all, Just to let you know that I think it should be fine for non-members to post directly to the SED-ML editors list without needing moderation. I think I have just changed this setting in the SF.net mailing list configuration jungle. If we suddenly get flooded with spam, then we'll have to try something different. Also, just checking who will be at COMBINE next month? Will it be worth trying to organise an editors meeting at some point? Cheers, David. |
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From: Falk S. <fal...@gm...> - 2016-08-22 16:47:48
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Thanks Chris! Unfortunately I will not be able to join COMBINE this year, so I cannot chair a session and it would be preferable if SBGN people who attend COMBINE shape the program. Cheers Falk > On 22 Aug 2016, at 17:29, Paolo Zuliani <pao...@ne...> wrote: > > Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. > > Thanks, > Paolo > > > -----Original Message----- > From: Chris Myers [mailto:my...@ec...] > Sent: 19 August 2016 14:00 > To: All SBML Editors past and present <all...@ca...> > Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... > Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > Hi, > > I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. > > Comments? > > Chris > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go.... > To post to this group, send an email to com...@go.... > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.eurprd07.prod.outlook.com. > For more options, visit https://groups.google.com/d/optout. > <COMBINE 2016_Schedule.xlsx> |
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From: Chris M. <my...@ec...> - 2016-08-22 15:45:17
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Thanks. Probably we can post a link to the document as a tentative schedule. Also, could you list the registered attendees on the website? You can see how I did it last year on my page. I updated every few days to make sure people could see an updated list of who is coming. Did you ever find Martin’s registration? We need to make sure we are not losing any. Thanks, Chris > On Aug 22, 2016, at 9:29 AM, Paolo Zuliani <pao...@ne...> wrote: > > Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. > > Thanks, > Paolo > > > -----Original Message----- > From: Chris Myers [mailto:my...@ec...] > Sent: 19 August 2016 14:00 > To: All SBML Editors past and present <all...@ca...> > Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... > Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule > > Hi, > > I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. > > Comments? > > Chris > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go.... > To post to this group, send an email to com...@go.... > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/AM4PR07MB1332A36204421EF5F40F077DA9E80%40AM4PR07MB1332.eurprd07.prod.outlook.com. > For more options, visit https://groups.google.com/d/optout. > <COMBINE 2016_Schedule.xlsx> |
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From: Paolo Z. <pao...@ne...> - 2016-08-22 15:30:13
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Many thanks Chris. I've filled Thursday's morning free 9.15 slot, so now we have a full program - updated schedule attached. Thanks, Paolo -----Original Message----- From: Chris Myers [mailto:my...@ec...] Sent: 19 August 2016 14:00 To: All SBML Editors past and present <all...@ca...> Cc: Paolo Zuliani <pao...@ne...>; The SBGN Editors internal mailing list <sbg...@li...>; Anil Wipat <ani...@ne...>; Robert Sidney Cox III <si...@ce...>; com...@go...; sbo...@go...; sed...@li... Subject: Re: [all-sbml-editors] COMBINE 2016 draft schedule Hi, I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. Comments? Chris |
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From: Chris M. <my...@ec...> - 2016-08-19 13:00:18
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Hi, I’ve added the SED-ML sessions, and I’ve made a few other changes based on other constraints that I’m aware of. We are still missing SBGN sessions. Falk or any of the SBGN editors want to suggest what to add for these? Also, all group editors should provide leaders for each breakout session. Comments? Chris |
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From: Paolo Z. <pao...@ne...> - 2016-08-01 19:45:35
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Hi all, I am with Chris, and I would prefer that comments were sent to me, Anil and the COMBINE coordinators. I’ll put the schedule up the COMBINE website asap. We’re in pretty good shape – we only need the breakout sessions. Many thanks! Best, Paolo From: Chris Myers [mailto:my...@ec...] Sent: 01 August 2016 17:03 To: Tramy Nguyen Cc: sbol-editors; All SBML Editors past and present; The SBGN Editors internal mailing list; sed...@li...; com...@go...; Paolo Zuliani; Anil Wipat Subject: Re: [SBOL Editors] Fwd: COMBINE 2016 draft schedule Hi, I wasn’t expecting the schedule to be edited rather that comments would be sent to the Paolo, Anil, and the Combine Coordinators. Paolo: do you want to put the schedule online so people can edit or comment on that? Chris On Aug 1, 2016, at 9:57 AM, Tramy Nguyen <tra...@gm...<mailto:tra...@gm...>> wrote: Hi Chris, I noticed that this spreadsheet is not a online spreadsheet where everyone can edit and make changes to the document. Does this mean that you want each editor to download this spreadsheet and submit their own version of their spreadsheet? Thanks, Tramy Nguyen On Mon, Aug 1, 2016 at 9:43 AM, Chris Myers <my...@ec...<mailto:my...@ec...>> wrote: Dear COMBINE Standard Editors, Please find attached a draft schedule for COMBINE 2016. Please let us know if you have any feedback on it. In particular, we would like to get the following from each of you: 1) Proposed breakouts for the afternoon sessions (include name of leader of the breakout), along with any hard timing constraints on them. 2) Volunteers for session chairs for the morning sessions. Thanks, Chris -- You received this message because you are subscribed to the Google Groups "SBOL Editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to sbo...@go...<mailto:sbol-editors%2Bu...@go...>. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "SBOL Editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to sbo...@go...<mailto:sbol-editors%2Bu...@go...>. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. To unsubscribe from this group and stop receiving emails from it, send an email to com...@go...<mailto:com...@go...>. To post to this group, send email to com...@go...<mailto:com...@go...>. To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/CAJxZzr7trxN3pWxb9k7mooAfYnePfq_OY3WpkG4U1_%3DZrQF%3D0g%40mail.gmail.com<https://groups.google.com/d/msgid/combine-coord/CAJxZzr7trxN3pWxb9k7mooAfYnePfq_OY3WpkG4U1_%3DZrQF%3D0g%40mail.gmail.com?utm_medium=email&utm_source=footer>. For more options, visit https://groups.google.com/d/optout. |
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From: Chris M. <my...@ec...> - 2016-08-01 16:03:05
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Hi, I wasn’t expecting the schedule to be edited rather that comments would be sent to the Paolo, Anil, and the Combine Coordinators. Paolo: do you want to put the schedule online so people can edit or comment on that? Chris > On Aug 1, 2016, at 9:57 AM, Tramy Nguyen <tra...@gm...> wrote: > > Hi Chris, > > I noticed that this spreadsheet is not a online spreadsheet where everyone can edit and make changes to the document. Does this mean that you want each editor to download this spreadsheet and submit their own version of their spreadsheet? > > Thanks, > > Tramy Nguyen > > On Mon, Aug 1, 2016 at 9:43 AM, Chris Myers <my...@ec... <mailto:my...@ec...>> wrote: > Dear COMBINE Standard Editors, > > Please find attached a draft schedule for COMBINE 2016. Please let us know if you have any feedback on it. In particular, we would like to get the following from each of you: > > 1) Proposed breakouts for the afternoon sessions (include name of leader of the breakout), along with any hard timing constraints on them. > 2) Volunteers for session chairs for the morning sessions. > > Thanks, > > Chris > > > -- > You received this message because you are subscribed to the Google Groups "SBOL Editors" group. > To unsubscribe from this group and stop receiving emails from it, send an email to sbo...@go... <mailto:sbol-editors%2Bu...@go...>. > For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. > > > > -- > You received this message because you are subscribed to the Google Groups "SBOL Editors" group. > To unsubscribe from this group and stop receiving emails from it, send an email to sbo...@go... <mailto:sbol-editors%2Bu...@go...>. > For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. > > > > -- > You received this message because you are subscribed to the Google Groups "COMBINE coordination" group. > To unsubscribe from this group and stop receiving emails from it, send an email to com...@go... <mailto:com...@go...>. > To post to this group, send email to com...@go... <mailto:com...@go...>. > To view this discussion on the web, visit https://groups.google.com/d/msgid/combine-coord/CAJxZzr7trxN3pWxb9k7mooAfYnePfq_OY3WpkG4U1_%3DZrQF%3D0g%40mail.gmail.com <https://groups.google.com/d/msgid/combine-coord/CAJxZzr7trxN3pWxb9k7mooAfYnePfq_OY3WpkG4U1_%3DZrQF%3D0g%40mail.gmail.com?utm_medium=email&utm_source=footer>. > For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>. |
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From: Chris M. <my...@ec...> - 2016-08-01 15:44:50
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Dear COMBINE Standard Editors, Please find attached a draft schedule for COMBINE 2016. Please let us know if you have any feedback on it. In particular, we would like to get the following from each of you: 1) Proposed breakouts for the afternoon sessions (include name of leader of the breakout), along with any hard timing constraints on them. 2) Volunteers for session chairs for the morning sessions. Thanks, Chris |
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From: Harold F. <har...@nc...> - 2016-04-15 16:03:19
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Call for Papers - EXTENDED DEADLINE April 22, 2016 [Apologies if you receive multiple copies of this announcement.] Please help forward it to other potentially interested attendees.] 8TH INTERNATIONAL WORKSHOP ON BIO-DESIGN AUTOMATION Newcastle upon Tyne, UK, August 16-18, 2016 http://www.iwbdaconf.org/2016 Flyer information: http://www.iwbdaconf.org/2016/docs/IWBDA_2016_CFP.pdf The Eighth International Workshop on Bio-Design Automation (IWBDA) at Newcastle upon Tyne in the UK will bring together researchers from the synthetic biology, systems biology, and design automation communities to discuss concepts, methodologies and software tools for the computational analysis and synthesis of biological systems. IWBDA offers a forum for cross-disciplinary discussion, with the aim of seeding and fostering collaboration between the biological and the design automation research communities. This year’s IWBDA will be hosted by the Interdisciplinary Computing and Complex BioSystems (ICOS) research group, Newcastle University. Topics of interest include -------------------------- * Design methodologies for synthetic biology. * Standardization of biological components. * Automated assembly techniques. * Computer-aided modeling and abstraction techniques. * Engineering methods inspired by biology. * Domain specific languages for synthetic biology. * Data exchange standards and models for synthetic biology. This year’s IWBDA will host the BDAthlon programming contest, where teams are given a set of programming challenges and then work to solve these challenges. In addition, there will be a satellite workshop on the Synthetic Biology Open Language (SBOL). Key Dates --------- * Extended abstract submission deadline: April 22, 2016 * Scholarship application due: April 30, 2016 * Abstract and scholarship notification: May 13, 2016 * BDAthlon team application due: May 20, 2016 * SBOL workshop: August 15, 2016 * BDAthlon Competition: August 16, 2016 * Main IWBDA workshop: August 17-18, 2016 Registration will be open soon. Abstract submission ------------------- Abstracts for oral and poster presentations should be two pages long, following ACM SIG Proceedings format. Detailed instructions can be found at: http://www.iwbdaconf.org/ ACS Synthetic Biology IWBDA 2016 Special Issue ---------------------------------------------- All attendees will also be invited to submit to ACS Synthetic Biology “IWBDA 2016” Special Issue. ACS Synthetic Biology has the highest editorial standards, offers rapid publication of your research findings and imposes NO author submission, page, color, or cover art charges. We are looking for high quality submissions, for peer-review, as either short Letters or full-length Articles. The submission deadline will be announced soon. Please feel free to contact the organizers with questions at: iwb...@li... IWBDA is organized by the non-profit Bio-Design Automation Consortium (BDAC). |
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From: Harold F. <har...@nc...> - 2016-04-02 15:17:31
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Call for Papers - Deadline April 15, 2016 [Apologies if you receive multiple copies of this announcement.] Please help forward it to other potentially interested attendees.] 8TH INTERNATIONAL WORKSHOP ON BIO-DESIGN AUTOMATION Newcastle upon Tyne, UK, August 16-18, 2016 http://www.iwbdaconf.org/2016 Flyer information: http://www.iwbdaconf.org/2016/docs/IWBDA_2016_CFP.pdf The Eighth International Workshop on Bio-Design Automation (IWBDA) at Newcastle upon Tyne in the UK will bring together researchers from the synthetic biology, systems biology, and design automation communities to discuss concepts, methodologies and software tools for the computational analysis and synthesis of biological systems. IWBDA offers a forum for cross-disciplinary discussion, with the aim of seeding and fostering collaboration between the biological and the design automation research communities. This year’s IWBDA will be hosted by the Interdisciplinary Computing and Complex BioSystems (ICOS) research group, Newcastle University. Topics of interest include -------------------------- * Design methodologies for synthetic biology. * Standardization of biological components. * Automated assembly techniques. * Computer-aided modeling and abstraction techniques. * Engineering methods inspired by biology. * Domain specific languages for synthetic biology. * Data exchange standards and models for synthetic biology. This year’s IWBDA will host the BDAthlon programming contest, where teams are given a set of programming challenges and then work to solve these challenges. In addition, there will be a satellite workshop on the Synthetic Biology Open Language (SBOL). Key Dates --------- * Abstract submission deadline: April 15, 2016 * Scholarship application due: April 30, 2016 * Abstract and scholarship notification: May 13, 2016 * BDAthlon team application due: May 20, 2016 * SBOL workshop: August 15, 2016 * BDAthlon Competition: August 16, 2016 * Main IWBDA workshop: August 17-18, 2016 Registration will be open soon. Abstract submission ------------------- Abstracts for oral and poster presentations should be two pages long, following ACM SIG Proceedings format. Detailed instructions can be found at: http://www.iwbdaconf.org/ ACS Synthetic Biology IWBDA 2016 Special Issue ---------------------------------------------- All attendees will also be invited to submit to ACS Synthetic Biology “IWBDA 2016” Special Issue. ACS Synthetic Biology has the highest editorial standards, offers rapid publication of your research findings and imposes NO author submission, page, color, or cover art charges. We are looking for high quality submissions, for peer-review, as either short Letters or full-length Articles. The submission deadline will be announced soon. Please feel free to contact the organizers with questions at: iwb...@li... IWBDA is organized by the non-profit Bio-Design Automation Consortium (BDAC). |
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From: David N. <dav...@gm...> - 2016-02-15 01:38:16
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Hi Lucian, On Sat, Feb 13, 2016 at 10:07 AM, Lucian Smith <luc...@gm...> wrote: > So, I've been doing some poking around, and found that the draft l1v3 spec > is (or, at least, *was*) at > > https://sourceforge.net/p/sed-ml/code/HEAD/tree/sed-ml/specification/trunk/level-1/version-3/ > > However, there doesn't seem to be much (if anything?) there that has yet > changed from l1v2. The DataDescription (2.4.1), DataSource (2.4.2), and Slice (2.4.3) sections (and related changes elsewhere) are all new in L1V3 - the ability to link to data is the main change in L1V3. I haven't had a chance to check, but hopefully that work is in the sourceforge SVN - the draft PDF is up at http://co.mbine.org/specifications/sed-ml.level-1.version-3-draft-1.pdf. I'm more than happy for you to go through the spec incorporating proposed and agreed changes :) Cheers, David. |
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From: Lucian S. <luc...@gm...> - 2016-02-12 21:07:55
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So, I've been doing some poking around, and found that the draft l1v3 spec is (or, at least, *was*) at https://sourceforge.net/p/sed-ml/code/HEAD/tree/sed-ml/specification/trunk/level-1/version-3/ However, there doesn't seem to be much (if anything?) there that has yet changed from l1v2. Also, there are tracker items up at https://sourceforge.net/p/sed-ml/sed-ml-l1v2/ Some of them have comments and others don't--one thing I found was that there seemed to be universal acceptance of a proposal to put 'id' and 'name' as optional attributes on SedBase; this isn't reflected in the l1v3 spec, for example. Would anyone mind if I went through the spec and took a stab at updating the UML and incorporating the proposed-and-agreed-to changes? -Lucian |
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From: David N. <dav...@gm...> - 2016-01-20 05:04:57
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Hi all, To start addressing Lucian's question, I have just shared a google doc with you all which describes the process by which I just updated the website. Fingers crossed I didn't bust anything :) Hopefully this will encourage us to try and keep the website more up-to-date. I'm also wondering if it might be better to replace the "News" section on the front page with a twitter widget and then create a SED-ML twitter account - at least then we might get updates more often...any thoughts? I have also added Lucian as an administrator of the SourceForge SEd-ML project, so you should have full access Lucian - let me know if I got the wrong user! Next, we should probably schedule a conference call soon and work out where we are in terms of the spec. HARMONY isn't until June this year (in Auckland), so there is quite a while till there might be a few of us in one location. Cheers, David. On Fri, Jan 15, 2016 at 1:55 PM, Lucian Smith <luc...@gm...> wrote: > Thanks, everyone! > > Would it be possible to get a summary of where we are, and what needs to be > done next? And I assume we have in-person meetings at COMBINE and HARMONY; > are there online meetings at other times, or just email discussions, or...? > > -Lucian > > On Thu, Jan 14, 2016 at 12:34 PM, Jonathan Cooper > <jon...@cs...> wrote: >> >> Glad to have you on board Lucian, I hope you enjoy your time here. It's >> been a pleasure working with you all, and yes, I certainly hope that >> I'll be able to contribute in the future. >> >> Best wishes, >> Jonathan >> >> On 14/01/2016 00:38, David Nickerson wrote: >> > Hi all, >> > >> > I have just added Lucian to the SED-ML editors mailing list and will >> > shortly (probably tomorrow) remove Jonathan from the list. >> > >> > Lucian - welcome! >> > >> > Jonathan - thanks for your contributions to the SED-ML editorial board >> > over the last few years. I know you will keep in touch and continue >> > contributing to the SED-ML community. >> > >> > >> > Cheers, >> > David. >> > >> > >> >> >> >> ------------------------------------------------------------------------------ >> Site24x7 APM Insight: Get Deep Visibility into Application Performance >> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month >> Monitor end-to-end web transactions and take corrective actions now >> Troubleshoot faster and improve end-user experience. Signup Now! >> http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 >> _______________________________________________ >> sed-ml-editors mailing list >> sed...@li... >> https://lists.sourceforge.net/lists/listinfo/sed-ml-editors > > > > ------------------------------------------------------------------------------ > Site24x7 APM Insight: Get Deep Visibility into Application Performance > APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month > Monitor end-to-end web transactions and take corrective actions now > Troubleshoot faster and improve end-user experience. Signup Now! > http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 > _______________________________________________ > sed-ml-editors mailing list > sed...@li... > https://lists.sourceforge.net/lists/listinfo/sed-ml-editors > -- David Nickerson about.me/david.nickerson |
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