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From: SourceForge.net <no...@so...> - 2010-10-07 10:35:04
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SED-ML L1V1 item #3082880, was opened at 2010-10-07 23:35 Message generated for change (Tracker Item Submitted) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082880&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: listing 49 is invalid SED-ML Initial Comment: The example presented in listing 49 doesn't contain the log* attributes or the marker to indicate it is not a complete SED-ML fragment. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082880&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-07 10:29:27
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SED-ML L1V1 item #3082878, was opened at 2010-10-07 23:29 Message generated for change (Tracker Item Submitted) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082878&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: mismatching quotes in section 4.6 Initial Comment: Looks like the wrong opening quotes are used in section 4.6 around "2D plot" and "3D plot" - '' instead of `` ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082878&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-07 10:20:26
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SED-ML L1V1 item #3082187, was opened at 2010-10-07 03:03 Message generated for change (Comment added) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082187&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: Listing 12 split over pages with figure 12 in the middle Initial Comment: might be nice to ensure the closing </sedML> tag stays with the rest of the listing and not have the listing split by the figure. ---------------------------------------------------------------------- >Comment By: David Nickerson (nickerso) Date: 2010-10-07 23:20 Message: also, listing 44 is split by table 21 and figure 38 with one line above and the rest below ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082187&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-07 10:09:05
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SED-ML L1V1 item #3082867, was opened at 2010-10-07 23:09 Message generated for change (Tracker Item Submitted) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082867&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: listing 42 typo in caption: daraGenerator --> dataGenerator Initial Comment: misspelling of data in daraGenerator ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082867&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-07 09:14:46
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SED-ML L1V1 item #3082199, was opened at 2010-10-06 15:24 Message generated for change (Settings changed) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None >Status: Closed Resolution: Fixed Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: section 3.6.1 reference to wrong example? Initial Comment: the reference to example 16 should probably be example 17. ---------------------------------------------------------------------- Comment By: Richard Adams (otter606) Date: 2010-10-07 10:13 Message: Changed to refer to example 17 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-07 09:13:56
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SED-ML L1V1 item #3082199, was opened at 2010-10-06 15:24 Message generated for change (Comment added) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open >Resolution: Fixed Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: section 3.6.1 reference to wrong example? Initial Comment: the reference to example 16 should probably be example 17. ---------------------------------------------------------------------- >Comment By: Richard Adams (otter606) Date: 2010-10-07 10:13 Message: Changed to refer to example 17 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 21:51:09
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SED-ML L1V1 item #3082519, was opened at 2010-10-06 22:51 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082519&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 3 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: last para of 4.1.1 ungrammatical Initial Comment: ... the language attribute is strongly encouraged. Not only does it help a user decide whether or not he is able to run the simulation, that is to parse the model referenced in the SED-ML file. The language attribute is also needed to... Suggest change : ... the language attribute is strongly encouraged for two reasons. Firstly, it helps a user decide whether or not he is able to run the simulation, that is to parse the model referenced in the SED-ML file. Secondly, the language attribute is also needed to.. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082519&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 20:42:21
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SED-ML L1V1 item #3082450, was opened at 2010-10-06 21:42 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082450&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 3 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: last para of 4.1.1 ungrammatical Initial Comment: ... the language attribute is strongly encouraged. Not only does it help a user decide whether or not he is able to run the simulation, that is to parse the model referenced in the SED-ML file. The language attribute is also needed to... Suggest change : ... the language attribute is strongly encouraged for two reasons. Firstly, it helps a user decide whether or not he is able to run the simulation, that is to parse the model referenced in the SED-ML file. Secondly, the language attribute is also needed to.. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082450&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 20:32:28
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SED-ML L1V1 item #3082434, was opened at 2010-10-06 21:16 Message generated for change (Comment added) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082434&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: Discrepancy between spec and schema on ListOf Initial Comment: Section 3.8 - "All listOf* elements are optional in a SED-ML document" but only ListofOutputs has minOccurs=0 - all other other top-level listofXXX lack a minOccurs - default is 1. Is there any reason for ListOf to be optional? -it's much easier to have ListOf as it keeps structure of document consistent ---------------------------------------------------------------------- >Comment By: Richard Adams (otter606) Date: 2010-10-06 21:32 Message: Also : ListOfVariables/PArameters : if can be empty then declarations in schema need 'minOccurs=0". Some listOf descriptions in the spec lack a statement of cardinality. Is it correct to allow the ListOfModels to have 0 models? ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082434&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 20:16:47
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SED-ML L1V1 item #3082434, was opened at 2010-10-06 21:16 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082434&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: Discrepancy between spec and schema on ListOf Initial Comment: Section 3.8 - "All listOf* elements are optional in a SED-ML document" but only ListofOutputs has minOccurs=0 - all other other top-level listofXXX lack a minOccurs - default is 1. Is there any reason for ListOf to be optional? -it's much easier to have ListOf as it keeps structure of document consistent ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082434&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 14:24:34
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SED-ML L1V1 item #3082199, was opened at 2010-10-07 03:24 Message generated for change (Tracker Item Submitted) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: section 3.6.1 reference to wrong example? Initial Comment: the reference to example 16 should probably be example 17. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082199&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 14:09:47
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SED-ML L1V1 item #3082192, was opened at 2010-10-06 15:09 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082192&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: Section 3.5 - DG references in outputs Initial Comment: This section describes Xreferenced elements but does not describe how Ouputs reference data generators ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082192&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 14:03:52
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SED-ML L1V1 item #3082187, was opened at 2010-10-07 03:03 Message generated for change (Tracker Item Submitted) made by nickerso You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082187&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: David Nickerson (nickerso) Assigned to: Nobody/Anonymous (nobody) Summary: Listing 12 split over pages with figure 12 in the middle Initial Comment: might be nice to ensure the closing </sedML> tag stays with the rest of the listing and not have the listing split by the figure. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082187&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 14:02:56
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SED-ML L1V1 item #3082186, was opened at 2010-10-06 15:02 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082186&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: Table 3 subelements to fix Initial Comment: Sub element listing should be listOfXXX not XXX ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082186&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 13:44:55
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SED-ML L1V1 item #3082174, was opened at 2010-10-06 14:44 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082174&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: SED-ML issues Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: section 3.1 id description no longer valid Initial Comment: Need to update to say not all ids need to be global ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082174&group_id=293618 |
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From: SourceForge.net <no...@so...> - 2010-10-06 13:39:41
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SED-ML L1V1 item #3082168, was opened at 2010-10-06 14:39 Message generated for change (Tracker Item Submitted) made by otter606 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082168&group_id=293618 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Specification content Group: Release Candidate 1 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Richard Adams (otter606) Assigned to: Nobody/Anonymous (nobody) Summary: xmlns attribute in SED-ML Initial Comment: Mentioned in spec but not in XML schema ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1345549&aid=3082168&group_id=293618 |
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From: Dagmar W. <dag...@un...> - 2010-06-07 10:32:29
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29 messages has been excluded from this view by a project administrator.
