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[sbml-svn] SF.net SVN: sbml:[26206] branches/libsbml-experimental/src/sbml/packages/ spatial/validator
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From: <luc...@us...> - 2019-12-17 00:11:35
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Revision: 26206
http://sourceforge.net/p/sbml/code/26206
Author: luciansmith
Date: 2019-12-17 00:11:33 +0000 (Tue, 17 Dec 2019)
Log Message:
-----------
Add support and tests for spatial rules 22850-22854.
Modified Paths:
--------------
branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h
branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h
branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp
branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx
Added Paths:
-----------
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-fail-01-01-10102.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-02.xml
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h 2019-12-16 23:17:21 UTC (rev 26205)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h 2019-12-17 00:11:33 UTC (rev 26206)
@@ -255,6 +255,10 @@
, SpatialCSGScaleScaleYMustBeDouble = 1222805
, SpatialCSGScaleScaleZMustBeDouble = 1222806
, SpatialCSGScaleAllowedElements = 1222850
+, SpatialCSGScaleScaleYRequiredIn2D = 1222851
+, SpatialCSGScaleScaleZRequiredIn3D = 1222852
+, SpatialCSGScaleNoScaleYIn1D = 1222853
+, SpatialCSGScaleNoScaleZIn2D = 1222854
, SpatialCSGHomogeneousTransformationAllowedCoreAttributes = 1222901
, SpatialCSGHomogeneousTransformationAllowedCoreElements = 1222902
, SpatialCSGHomogeneousTransformationAllowedElements = 1222903
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h 2019-12-16 23:17:21 UTC (rev 26205)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h 2019-12-17 00:11:33 UTC (rev 26206)
@@ -2301,6 +2301,46 @@
}
},
+ // 1222751
+ { SpatialCSGScaleScaleYRequiredIn2D,
+ "A <csgScale> must have 'scaleY' in 2D or 3D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:scaleY' on a <csgScale> is required if the <geometry> of the model has a <coordinateComponent> child of type 'cartesianY'.",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222752
+ { SpatialCSGScaleScaleZRequiredIn3D,
+ "A <csgScale> must have 'scaleZ' in 3D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:scaleZ' on a <csgScale> is required if the <geometry> of the model has a <coordinateComponent> child of type 'cartesianZ'.",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222753
+ { SpatialCSGScaleNoScaleYIn1D,
+ "A <csgScale> must not have 'scaleY' in 1D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:scaleY' on a <csgScale> must not be defined if the <geometry> of the model has no <coordinateComponent> child of type 'cartesianY'.",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222754
+ { SpatialCSGScaleNoScaleZIn2D,
+ "A <csgScale> must not have 'scaleZ' in 1D or 2D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:scaleZ' on a <csgScale> must not be defined if the <geometry> of the model has no <coordinateComponent> child of type 'cartesian'.",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
// 1222901
{ SpatialCSGHomogeneousTransformationAllowedCoreAttributes,
"Core attributes allowed on <csgHomogeneousTransformation>.",
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp 2019-12-16 23:17:21 UTC (rev 26205)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp 2019-12-17 00:11:33 UTC (rev 26206)
@@ -1665,7 +1665,7 @@
END_CONSTRAINT
-// 1222651
+// 1222751
START_CONSTRAINT(SpatialCSGRotationRotateYRequiredIn2D, CSGRotation, rotation)
{
bool fail = false;
@@ -1690,7 +1690,7 @@
END_CONSTRAINT
-// 1222652
+// 1222752
START_CONSTRAINT(SpatialCSGRotationRotateZRequiredIn3D, CSGRotation, rotation)
{
bool fail = false;
@@ -1715,7 +1715,7 @@
END_CONSTRAINT
-// 1222653
+// 1222753
START_CONSTRAINT(SpatialCSGRotationNoRotateYIn1D, CSGRotation, rotation)
{
pre(rotation.isSetRotateY());
@@ -1736,7 +1736,7 @@
END_CONSTRAINT
-// 1222654
+// 1222754
START_CONSTRAINT(SpatialCSGRotationNoRotateZIn2D, CSGRotation, rotation)
{
pre(rotation.isSetRotateZ());
@@ -1757,7 +1757,7 @@
END_CONSTRAINT
-// 1222655
+// 1222755
START_CONSTRAINT(SpatialCSGRotationNoOriginIn3D, CSGRotation, rotation)
{
pre(rotation.isSetRotateX());
@@ -1781,6 +1781,98 @@
END_CONSTRAINT
+// 1222851
+START_CONSTRAINT(SpatialCSGScaleScaleYRequiredIn2D, CSGScale, scale)
+{
+ bool fail = false;
+ pre(!scale.isSetScaleY());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ if (geometry->getCoordinateComponent(cc)->getType() == SPATIAL_COORDINATEKIND_CARTESIAN_Y) {
+ msg = "A <csgTranslation>";
+ if (scale.isSetId()) {
+ msg += " with the id '" + scale.getId() + "'";
+ }
+ msg += " has no 'scaleY' value, but the <geometry> has a <coordinateComponent> child of type 'cartesianY'.";
+ fail = true;
+ break;
+ }
+ }
+ inv(fail == false);
+}
+END_CONSTRAINT
+
+
+// 1222852
+START_CONSTRAINT(SpatialCSGScaleScaleZRequiredIn3D, CSGScale, scale)
+{
+ bool fail = false;
+ pre(!scale.isSetScaleZ());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ if (geometry->getCoordinateComponent(cc)->getType() == SPATIAL_COORDINATEKIND_CARTESIAN_Z) {
+ msg = "A <csgTranslation>";
+ if (scale.isSetId()) {
+ msg += " with the id '" + scale.getId() + "'";
+ }
+ msg += " has no 'scaleZ' value, but the <geometry> has a <coordinateComponent> child of type 'cartesianZ'.";
+ fail = true;
+ break;
+ }
+ }
+ inv(fail == false);
+}
+END_CONSTRAINT
+
+
+// 1222853
+START_CONSTRAINT(SpatialCSGScaleNoScaleYIn1D, CSGScale, scale)
+{
+ pre(scale.isSetScaleY());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ pre(geometry->getCoordinateComponent(cc)->getType() != SPATIAL_COORDINATEKIND_CARTESIAN_Y);
+ }
+ msg = "A <csgTranslation>";
+ if (scale.isSetId()) {
+ msg += " with the id '" + scale.getId() + "'";
+ }
+ msg += " has a 'scaleY' value, but the <geometry> has no <coordinateComponent> child of type 'cartesianY'.";
+ inv(false);
+}
+END_CONSTRAINT
+
+
+// 1222854
+START_CONSTRAINT(SpatialCSGScaleNoScaleZIn2D, CSGScale, scale)
+{
+ pre(scale.isSetScaleZ());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ pre(geometry->getCoordinateComponent(cc)->getType() != SPATIAL_COORDINATEKIND_CARTESIAN_Z);
+ }
+ msg = "A <csgTranslation>";
+ if (scale.isSetId()) {
+ msg += " with the id '" + scale.getId() + "'";
+ }
+ msg += " has a 'scaleZ' value, but the <geometry> has no <coordinateComponent> child of type 'cartesianZ'.";
+ inv(false);
+}
+END_CONSTRAINT
+
+
// 122__
//START_CONSTRAINT(Spatial, Class, class)
//{
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx 2019-12-16 23:17:21 UTC (rev 26205)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx 2019-12-17 00:11:33 UTC (rev 26206)
@@ -99,6 +99,10 @@
addConstraint(new VConstraintCSGRotationSpatialCSGRotationNoRotateYIn1D(*this));
addConstraint(new VConstraintCSGRotationSpatialCSGRotationNoRotateZIn2D(*this));
addConstraint(new VConstraintCSGRotationSpatialCSGRotationNoOriginIn3D(*this));
+addConstraint(new VConstraintCSGScaleSpatialCSGScaleScaleYRequiredIn2D(*this));
+addConstraint(new VConstraintCSGScaleSpatialCSGScaleScaleZRequiredIn3D(*this));
+addConstraint(new VConstraintCSGScaleSpatialCSGScaleNoScaleYIn1D(*this));
+addConstraint(new VConstraintCSGScaleSpatialCSGScaleNoScaleZIn2D(*this));
//Constraints defined in their own class ('global constraints')
addConstraint(new SpatialCompartmentMappingUnitSizesCheck(SpatialCompartmentMappingUnitSizesSum, *this));
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-fail-01-01-10102.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-fail-01-01-10102.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-fail-01-01-10102.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,44 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ <spatial:csgPrimitive spatial:id="sphere2" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222850-pass-00-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-fail-01-02.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2">
+ <spatial:csgPrimitive spatial:id="circle1" spatial:primitiveType="circle"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222851-pass-00-02.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3">
+ <spatial:csgPrimitive spatial:id="circle1" spatial:primitiveType="circle"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-fail-01-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222852-pass-00-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="sphere1" spatial:primitiveType="sphere"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-fail-01-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222853-pass-00-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleZ="0.2">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-fail-01-02.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3" spatial:scaleZ="0.4">
+ <spatial:csgPrimitive spatial:id="circle1" spatial:primitiveType="circle"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-01.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222854-pass-00-02.xml 2019-12-17 00:11:33 UTC (rev 26206)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgScale spatial:scaleX="0.2" spatial:scaleY="0.3">
+ <spatial:csgPrimitive spatial:id="circle1" spatial:primitiveType="circle"/>
+ </spatial:csgScale>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
|
