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[sbml-svn] SF.net SVN: sbml:[26204] branches/libsbml-experimental/src/sbml/packages/ spatial/validator
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From: <luc...@us...> - 2019-12-16 22:03:02
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Revision: 26204
http://sourceforge.net/p/sbml/code/26204
Author: luciansmith
Date: 2019-12-16 22:03:00 +0000 (Mon, 16 Dec 2019)
Log Message:
-----------
Add support and tests for spatial rules 22750-22754.
Modified Paths:
--------------
branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h
branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h
branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp
branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx
Added Paths:
-----------
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-fail-01-01-10102.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-02.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-01.xml
branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-02.xml
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h 2019-12-16 21:17:17 UTC (rev 26203)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLError.h 2019-12-16 22:03:00 UTC (rev 26204)
@@ -243,6 +243,10 @@
, SpatialCSGRotationRotateYMustBeDouble = 1222706
, SpatialCSGRotationRotateZMustBeDouble = 1222707
, SpatialCSGRotationAllowedElements = 1222750
+, SpatialCSGRotationRotateYRequiredIn2D = 1222751
+, SpatialCSGRotationRotateZRequiredIn3D = 1222752
+, SpatialCSGRotationNoRotateYIn1D = 1222753
+, SpatialCSGRotationNoRotateZIn2D = 1222754
, SpatialCSGScaleAllowedCoreAttributes = 1222801
, SpatialCSGScaleAllowedCoreElements = 1222802
, SpatialCSGScaleAllowedAttributes = 1222803
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h 2019-12-16 21:17:17 UTC (rev 26203)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h 2019-12-16 22:03:00 UTC (rev 26204)
@@ -2169,6 +2169,46 @@
}
},
+ // 1222751
+ { SpatialCSGRotationRotateYRequiredIn2D,
+ "A <csgRotation> must have 'rotateY' in 2D or 3D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:rotateY' on a <csgRotation> is required if the <geometry> of the model has a <coordinateComponent> child of type 'cartesianY'. ",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222752
+ { SpatialCSGRotationRotateZRequiredIn3D,
+ "A <csgRotation> must have 'rotateZ' in 3D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:rotateZ' on a <csgRotation> is required if the <geometry> of the model has a <coordinateComponent> child of type 'cartesianZ'. ",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222753
+ { SpatialCSGRotationNoRotateYIn1D,
+ "A <csgRotation> must not have 'rotateY' in 1D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:rotateY' on a <csgRotation> must not be defined if the <geometry> of the model has no <coordinateComponent> child of type 'cartesianY'. ",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
+ // 1222754
+ { SpatialCSGRotationNoRotateZIn2D,
+ "A <csgRotation> must not have 'rotateZ' in 2D geometries.",
+ LIBSBML_CAT_GENERAL_CONSISTENCY,
+ LIBSBML_SEV_ERROR,
+ "The attribute 'spatial:rotateZ' on a <csgRotation> must not be defined if the <geometry> of the model has no <coordinateComponent> child of type 'cartesianZ'. ",
+ { "L3V1 Spatial V1 Section"
+ }
+ },
+
// 1222801
{ SpatialCSGScaleAllowedCoreAttributes,
"Core attributes allowed on <csgScale>.",
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp 2019-12-16 21:17:17 UTC (rev 26203)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp 2019-12-16 22:03:00 UTC (rev 26204)
@@ -1665,6 +1665,98 @@
END_CONSTRAINT
+// 1222651
+START_CONSTRAINT(SpatialCSGRotationRotateYRequiredIn2D, CSGRotation, rotation)
+{
+ bool fail = false;
+ pre(!rotation.isSetRotateY());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ if (geometry->getCoordinateComponent(cc)->getType() == SPATIAL_COORDINATEKIND_CARTESIAN_Y) {
+ msg = "A <csgTranslation>";
+ if (rotation.isSetId()) {
+ msg += " with the id '" + rotation.getId() + "'";
+ }
+ msg += " has no 'rotateY' value, but the <geometry> has a <coordinateComponent> child of type 'cartesianY'.";
+ fail = true;
+ break;
+ }
+ }
+ inv(fail == false);
+}
+END_CONSTRAINT
+
+
+// 1222652
+START_CONSTRAINT(SpatialCSGRotationRotateZRequiredIn3D, CSGRotation, rotation)
+{
+ bool fail = false;
+ pre(!rotation.isSetRotateZ());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ if (geometry->getCoordinateComponent(cc)->getType() == SPATIAL_COORDINATEKIND_CARTESIAN_Z) {
+ msg = "A <csgTranslation>";
+ if (rotation.isSetId()) {
+ msg += " with the id '" + rotation.getId() + "'";
+ }
+ msg += " has no 'rotateZ' value, but the <geometry> has a <coordinateComponent> child of type 'cartesianY'.";
+ fail = true;
+ break;
+ }
+ }
+ inv(fail == false);
+}
+END_CONSTRAINT
+
+
+// 1222653
+START_CONSTRAINT(SpatialCSGRotationNoRotateYIn1D, CSGRotation, rotation)
+{
+ pre(rotation.isSetRotateY());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ pre(geometry->getCoordinateComponent(cc)->getType() != SPATIAL_COORDINATEKIND_CARTESIAN_Y);
+ }
+ msg = "A <csgTranslation>";
+ if (rotation.isSetId()) {
+ msg += " with the id '" + rotation.getId() + "'";
+ }
+ msg += " has a 'rotateY' value, but the <geometry> has no <coordinateComponent> child of type 'cartesianY'.";
+ inv(false);
+}
+END_CONSTRAINT
+
+
+// 1222654
+START_CONSTRAINT(SpatialCSGRotationNoRotateZIn2D, CSGRotation, rotation)
+{
+ pre(rotation.isSetRotateZ());
+ SpatialModelPlugin *plug = (SpatialModelPlugin*)(m.getPlugin("spatial"));
+ pre(plug != NULL);
+ pre(plug->isSetGeometry());
+ const Geometry* geometry = plug->getGeometry();
+ for (unsigned long cc = 0; cc < geometry->getNumCoordinateComponents(); cc++) {
+ pre(geometry->getCoordinateComponent(cc)->getType() != SPATIAL_COORDINATEKIND_CARTESIAN_Z);
+ }
+ msg = "A <csgTranslation>";
+ if (rotation.isSetId()) {
+ msg += " with the id '" + rotation.getId() + "'";
+ }
+ msg += " has a 'rotateZ' value, but the <geometry> has no <coordinateComponent> child of type 'cartesianZ'.";
+ inv(false);
+}
+END_CONSTRAINT
+
+
// 122__
//START_CONSTRAINT(Spatial, Class, class)
//{
Modified: branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx 2019-12-16 21:17:17 UTC (rev 26203)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx 2019-12-16 22:03:00 UTC (rev 26204)
@@ -94,6 +94,10 @@
addConstraint(new VConstraintCSGTranslationSpatialCSGTranslationTranslateZRequiredIn3D(*this));
addConstraint(new VConstraintCSGTranslationSpatialCSGTranslationNoTranslateYIn1D(*this));
addConstraint(new VConstraintCSGTranslationSpatialCSGTranslationNoTranslateZIn2D(*this));
+addConstraint(new VConstraintCSGRotationSpatialCSGRotationRotateYRequiredIn2D(*this));
+addConstraint(new VConstraintCSGRotationSpatialCSGRotationRotateZRequiredIn3D(*this));
+addConstraint(new VConstraintCSGRotationSpatialCSGRotationNoRotateYIn1D(*this));
+addConstraint(new VConstraintCSGRotationSpatialCSGRotationNoRotateZIn2D(*this));
//Constraints defined in their own class ('global constraints')
addConstraint(new SpatialCompartmentMappingUnitSizesCheck(SpatialCompartmentMappingUnitSizesSum, *this));
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-fail-01-01-10102.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-fail-01-01-10102.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-fail-01-01-10102.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,44 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ <spatial:csgPrimitive spatial:id="cube2" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222750-pass-00-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-fail-01-02.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222751-pass-00-02.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-fail-01-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222752-pass-00-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_3" spatial:type="cartesianZ" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_5" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_6" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="3"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0" spatial:coord3="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-fail-01-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222753-pass-00-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateZ="0.3" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-fail-01-02.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateZ="0.4" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-01.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-01.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-01.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="1"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgSetOperator spatial:id="nothing" spatial:operationType="union"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
Added: branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-02.xml
===================================================================
--- branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-02.xml (rev 0)
+++ branches/libsbml-experimental/src/sbml/packages/spatial/validator/test/test-data/general-constraints/1222754-pass-00-02.xml 2019-12-16 22:03:00 UTC (rev 26204)
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml level="3" spatial:required="true" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
+ <model>
+ <spatial:geometry spatial:coordinateSystem="cartesian" spatial:id="geometry_1">
+ <spatial:listOfCoordinateComponents>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_1" spatial:type="cartesianX" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_1" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_2" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ <spatial:coordinateComponent spatial:id="coordinateComponent_2" spatial:type="cartesianY" spatial:unit="dimensionless">
+ <spatial:boundaryMin spatial:id="boundary_3" spatial:value="0"/>
+ <spatial:boundaryMax spatial:id="boundary_4" spatial:value="1"/>
+ </spatial:coordinateComponent>
+ </spatial:listOfCoordinateComponents>
+ <spatial:listOfDomainTypes>
+ <spatial:domainType spatial:id="domainType_1" spatial:spatialDimensions="2"/>
+ </spatial:listOfDomainTypes>
+ <spatial:listOfDomains>
+ <spatial:domain spatial:domainType="domainType_1" spatial:id="domain_1">
+ <spatial:listOfInteriorPoints>
+ <spatial:interiorPoint spatial:coord1="0" spatial:coord2="0"/>
+ </spatial:listOfInteriorPoints>
+ </spatial:domain>
+ </spatial:listOfDomains>
+ <spatial:listOfGeometryDefinitions>
+ <spatial:csGeometry spatial:id="csGeometryDefinition_1" spatial:isActive="true">
+ <spatial:listOfCSGObjects>
+ <spatial:csgObject spatial:domainType="domainType_1" spatial:id="csgObject_1" spatial:ordinal="0">
+ <spatial:csgRotation spatial:rotateX="0.2" spatial:rotateY="0.3" spatial:rotateAngleInRadians="2.7">
+ <spatial:csgPrimitive spatial:id="cube1" spatial:primitiveType="cube"/>
+ </spatial:csgRotation>
+ </spatial:csgObject>
+ </spatial:listOfCSGObjects>
+ </spatial:csGeometry>
+ </spatial:listOfGeometryDefinitions>
+ </spatial:geometry>
+ </model>
+</sbml>
+
|
