Re: [sbml-annot] BioModels.net qualifier discussion

[Nicolas Le n. <le...@eb...>]

On 14/01/11 14:25, Neil Swainston wrote:

> I think the goal is to recommend that the core annotations and "new"
> Annot annotations are used mutually exclusively. So, the core will use
> the old qualifiers and the Annot the new ones. In both cases, the
> qualifiers will be perennial.

Neil is correct. There won't be two schemes but only one scheme. 
"bqbiol:hasPart" and "bqbiol:part" are not two qualifiers. They are two 
forms of the same qualifier. The definition on biomodels.net will just be 
amended as follow:

hasPart, part

The biological entity represented by the model component includes the 
subject of the referenced resource, either physically or logically. This 
relation might be used to link a complex to the description of its components.


> I'm looking at the Annot specification now (sorry for the delay...) and
> in this I think that it would make sense to include a mapping from the
> core qualifiers to the new Annot ones (essentially, the finalised list
> that was produced by Nick J recently).
>
> Cheers,
>
> Neil.
>
> Neil Swainston Experimental Officer
>
> Manchester Centre for Integrative Systems Biology Manchester
> Interdisciplinary Biocentre University of Manchester Manchester M1 7DN
> United Kingdom
>
> On 14 Jan 2011, at 00:26, Mike Hucka wrote:
>
>> Maybe I missed it in the discussions so far, but is some versioning
>> going to be added, so that when reading a given model, a consumer can
>> figure out which qualifier scheme is being used?  Or do you think it
>> won't be required, because the new terms will map one-to-one to the
>> old ones, and all a consumer would need to know is both terms for a
>> given relationship?
>>
>> MH
>>
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-- 
Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC,
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