A lightweight OpenGL based interactive SAM/BAM viewer. Quickly and easily generate aggregate statistics from SAM/BAM files like coverage, polarity, and minor allele frequencies, then scroll and explore freely with a simple mouse based interface. Multiple windows can be synchronized for careful comparison across multiple experiments.

Project Samples

A close up on ChIP-SEQ data from a chicken centromere showing forward, reverse, and polarity data simultaneously. Illustrating feature calling on a heterozygous base in a deep coverage (SureSelect) example. Chicken centrome ChIP-SEQ coverage Minor and major alleles frequencies from RNA-Seq on Natto, also showing GTF gene annotation overlay. A close up on a small clump of reads showing the read detail display

Project Activity

See All Activity >

Categories

Bio-Informatics, Data Visualization

License

Affero GNU Public License

Follow samscope

samscope Web Site

Other Useful Business Software
Train ML Models With SQL You Already Know Icon
Train ML Models With SQL You Already Know

BigQuery automates data prep, analysis, and predictions with built-in AI assistance.

Build and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
Try Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of samscope!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

OpenGL

Programming Language

C++

Related Categories

C++ Bio-Informatics Software, C++ Data Visualization Software

Registered

2011-09-30
Report inappropriate content