samscope

A lightweight OpenGL based interactive SAM/BAM viewer. Quickly and easily generate aggregate statistics from SAM/BAM files like coverage, polarity, and minor allele frequencies, then scroll and explore freely with a simple mouse based interface. Multiple windows can be synchronized for careful comparison across multiple experiments.

Project Samples

A close up on ChIP-SEQ data from a chicken centromere showing forward, reverse, and polarity data simultaneously.

Illustrating feature calling on a heterozygous base in a deep coverage (SureSelect) example.

Minor and major alleles frequencies from RNA-Seq on Natto, also showing GTF gene annotation overlay.

A close up on a small clump of reads showing the read detail display

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License

Affero GNU Public License

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

OpenGL

Programming Language

C++

Related Categories

C++ Bio-Informatics Software, C++ Data Visualization Software

Registered

2011-09-30

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