roboptim-commit Mailing List for RobOptim (Page 98)

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      from  0405cf16b81685971a4cdf6e073365d12f0148b4 (commit)

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- Log -----------------------------------------------------------------
commit 45e922d711617be94758c6ab235c98262df09d49
Author: Thomas Moulard <tho...@gm...>
Date:   Wed Jun 10 18:52:48 2009 +0900

    Synchronize with share.
    
    	* build-aux/boost.m4,
    	* build-aux/deb.mk: Synchronize.
    	* build-aux/doxygen.m4: New.
    	* build-aux/ebuild.mk,
    	* build-aux/init.mk: Synchronize.
    	* build-aux/pkg-config.mk: New.
    	* build-aux/pkg-config.pc.in,
    	* build-aux/rpm.mk: Synchronize.
    	* configure.ac,
    	* doc/Doxyfile.in,
    	* doc/Makefile.am,
    	* doc/sf-upload.sh.in: Synchronize.
    
    Signed-off-by: Thomas Moulard <tho...@gm...>

diff --git a/ChangeLog b/ChangeLog
index 29283b7..280bc66 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,19 @@
+2009-06-10  Thomas Moulard  <tho...@gm...>
+
+	Synchronize with share.
+	* build-aux/boost.m4,
+	* build-aux/deb.mk: Synchronize.
+	* build-aux/doxygen.m4: New.
+	* build-aux/ebuild.mk,
+	* build-aux/init.mk: Synchronize.
+	* build-aux/pkg-config.mk: New.
+	* build-aux/pkg-config.pc.in,
+	* build-aux/rpm.mk: Synchronize.
+	* configure.ac,
+	* doc/Doxyfile.in,
+	* doc/Makefile.am,
+	* doc/sf-upload.sh.in: Synchronize.
+
 2009-06-08  Thomas Moulard  <tho...@gm...>
 
 	Update to new interface and document.
diff --git a/build-aux/boost.m4 b/build-aux/boost.m4
index ae935d9..a9fc46c 100644
--- a/build-aux/boost.m4
+++ b/build-aux/boost.m4
@@ -153,7 +153,7 @@ boost-lib-version = BOOST_LIB_VERSION],
     # e.g. "134" for 1_34_1 or "135" for 1_35
     boost_major_version=`echo "$boost_cv_lib_version" | sed 's/_//;s/_.*//'`
     case $boost_major_version in #(
-      '' | *[[^0-9]]*)
+      '' | *[[!0-9]]*)
         AC_MSG_ERROR([Invalid value: boost_major_version=$boost_major_version])
         ;;
     esac
@@ -451,6 +451,13 @@ AC_DEFUN([BOOST_FUNCTION],
 [BOOST_FIND_HEADER([boost/function.hpp])])
 
 
+# BOOST_FUSTION()
+# ----------------
+# Look for Boost.Fusion
+AC_DEFUN([BOOST_FUSION],
+[BOOST_FIND_HEADER([boost/fusion/include/vector.hpp])])
+
+
 # BOOST_GRAPH([PREFERRED-RT-OPT])
 # -------------------------------
 # Look for Boost.Graphs.  For the documentation of PREFERRED-RT-OPT, see the
diff --git a/build-aux/deb.mk b/build-aux/deb.mk
index 994b575..74adbe4 100644
--- a/build-aux/deb.mk
+++ b/build-aux/deb.mk
@@ -1,6 +1,6 @@
 include $(top_srcdir)/build-aux/init.mk
 
-DPKG_BUILDPACKAGE = dpkg-buildpackage -rfakeroot -us -uc -d
+DPKG_BUILDPACKAGE = dpkg-buildpackage -rfakeroot -E -W -d
 distdir = $(PACKAGE)-$(VERSION)
 DIST_ARCHIVE = $(distdir).tar.gz
 
@@ -12,11 +12,21 @@ EXTRA_DIST +=                                   \
 	docs					\
 	rules
 
-.PHONY: deb
+.PHONY: deb deb-prepare
 
-deb: $(top_builddir)/$(DIST_ARCHIVE)
+clean-local:
+	rm -rf $(PACKAGE)-$(VERSION)
+	rm -f $(DIST_ARCHIVE)
+	rm -f $(PACKAGE)_$(VERSION)-*.tar.gz
+	rm -f $(PACKAGE)_$(VERSION)-*.dsc
+	rm -f $(PACKAGE)_$(VERSION)-*.changes
+	rm -f $(PACKAGE)_$(VERSION)-*.deb
+
+deb-prepare:
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) dist-gzip
 	rm -rf $(distdir)
-	tar xvzf $<
+	tar xzf $(top_builddir)/$(DIST_ARCHIVE)
 	ln -s packages/debian $(distdir)
+
+deb: deb-prepare
 	cd $(distdir) && $(DPKG_BUILDPACKAGE)
diff --git a/build-aux/doxygen.m4 b/build-aux/doxygen.m4
new file mode 100644
index 0000000..eefbf3f
--- /dev/null
+++ b/build-aux/doxygen.m4
@@ -0,0 +1,63 @@
+#                                                                -*-Autoconf-*-
+# Copyright (C) 2009 by Thomas Moulard, FIXME.
+# This file is part of the roboptim.
+#
+# roboptim is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# Additional permission under section 7 of the GNU General Public
+# License, version 3 ("GPLv3"):
+#
+# If you convey this file as part of a work that contains a
+# configuration script generated by Autoconf, you may do so under
+# terms of your choice.
+#
+# roboptim is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with roboptim.  If not, see <http://www.gnu.org/licenses/>.
+
+# serial 1
+
+# ------ #
+# README #
+# ------ #
+
+# This m4 file can be used to search for Doxygen and its dependencies.
+
+m4_pattern_forbid([^JRL])
+
+# JRL_PROG_DOXYGEN([REQUIRED_VERSION])
+# --------------------------------------------
+# Search for Doxygen and related tools (perl and dot).
+AC_DEFUN([JRL_PROG_DOXYGEN],
+[# Search for Doxygen and its related tools.
+#  Search for Doxygen.
+AC_ARG_VAR([DOXYGEN], [the Doxygen documentation generation program])
+AC_CHECK_PROGS([DOXYGEN], [doxygen])
+
+
+#  Search for Perl.
+AC_ARG_VAR([PERL], [the perl interpreter])
+AC_CHECK_PROGS([PERL], [perl])
+
+if test x"$PERL" = x; then
+ AC_MSG_FAILURE([Perl not found.])
+fi
+
+
+#  Search for Dot.
+AC_ARG_VAR([DOT], [the dot graphic tool])
+AC_CHECK_PROGS([DOT], [dot])
+
+if test x"$DOT" = x; then
+ AC_SUBST([HAVE_DOT], [NO])
+else
+ AC_SUBST([HAVE_DOT], [YES])
+fi
+]) # JRL_PROG_DOXYGEN
diff --git a/build-aux/ebuild.mk b/build-aux/ebuild.mk
index ccf527c..e02d5cd 100644
--- a/build-aux/ebuild.mk
+++ b/build-aux/ebuild.mk
@@ -18,7 +18,7 @@ install-ebuild:
 	 echo "to the portage root you want to install the ebuild into.";\
 	else								 \
          DIR="$$PORTAGE_ROOT/$(EBUILD_CATEGORY)/$(PACKAGE)";		 \
-	 $(MKDIR_P) $$DIR/files;					 \
+	 $(mkdir_p) $$DIR/files;					 \
 	 for i in `echo "$(EXTRA_DIST)" | sed 's/ /\n/g'`; do		 \
 	  cp "$(srcdir)/$$i" "$$DIR";					 \
 	  if test x`echo "$$i" | grep "\.ebuild$$"` = "x$$i"; then	 \
diff --git a/build-aux/init.mk b/build-aux/init.mk
index 038cd44..f7218a7 100644
--- a/build-aux/init.mk
+++ b/build-aux/init.mk
@@ -18,3 +18,6 @@ AM_CPPFLAGS += -I$(top_builddir)/src -I$(top_srcdir)/src
 
 # ...then search in distributed headers.
 AM_CPPFLAGS += -I$(top_srcdir)/include
+
+# Add boost include dir
+AM_CPPFLAGS += $(BOOST_CPPFLAGS)
diff --git a/build-aux/pkg-config.mk b/build-aux/pkg-config.mk
new file mode 100644
index 0000000..5dc23aa
--- /dev/null
+++ b/build-aux/pkg-config.mk
@@ -0,0 +1,83 @@
+#                                                                -*-Automake-*-
+# Copyright (C) 2009 by Thomas Moulard, AIST, CNRS, INRIA.
+# This file is part of the roboptim.
+#
+# roboptim is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# Additional permission under section 7 of the GNU General Public
+# License, version 3 ("GPLv3"):
+#
+# If you convey this file as part of a work that contains a
+# configuration script generated by Autoconf, you may do so under
+# terms of your choice.
+#
+# roboptim is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with roboptim.  If not, see <http://www.gnu.org/licenses/>.
+
+# -------#
+# README #
+# -------#
+
+# This file contains pkg-config generation rules for Automake.
+#
+# This file assumes that:
+#
+# - you include *before* this file init.mk or make sure that any global
+# variable can be used with the += syntax.
+# - there is no other rule using install-data-local and uninstall-data-local.
+#
+# The generate pkg-config files can be customized using three Autoconf
+# variables:
+# - PKGCONFIG_REQUIRES: package dependencies,
+# - PKGCONFIG_LIBS: package LDFLAGS,
+# - PKGCONFIG_CFLAGS: package CFLAGS/CPPFLAGS/CXXFLAGS.
+
+
+# Variables
+pkg_config_file = '@PACKAGE_TARNAME@.pc'
+pkgdir = "$(DESTDIR)$(libdir)/pkgconfig/"
+
+edit = $(SED) -e "s|@prefix\@|$(prefix)|"			\
+              -e 's,@exec_prefix\@,$(exec_prefix),g'		\
+              -e 's,@libdir\@,$(libdir),g'			\
+              -e 's,@includedir\@,$(includedir),g'		\
+              -e 's,@datarootdir\@,$(datarootdir),g'		\
+              -e 's,@PACKAGE\@,$(PACKAGE),g'			\
+              -e 's,@PACKAGE_TARNAME\@,$(PACKAGE_TARNAME),g'	\
+              -e 's,@VERSION\@,$(PACKAGE_VERSION),g'
+
+EXTRA_DIST += build-aux/pkg-config.pc.in
+CLEANFILES += $(PKG_CONFIG_FILE)
+
+# pkg-config generation.
+@PACKAGE_TARNAME@.pc: $(srcdir)/build-aux/pkg-config.pc.in
+	$(top_builddir)/config.status \
+	--file="$@":"$(srcdir)/build-aux/pkg-config.pc.in"
+
+# Install, uninstall rules.
+install-data-local: install-pkg-config
+uninstall-local: uninstall-pkg-config
+
+install-pkg-config: $(PACKAGE_TARNAME).pc
+	$(mkdir_p) $(PKG_DIR)
+	$(install_sh_DATA) "$(PKG_CONFIG_FILE)" $(PKG_DIR)
+
+uninstall-pkg-config:
+	-rm -f "$(PKG_DIR)$(PKG_CONFIG_FILE)"
+
+# Check that the pkg-config file is generated.
+check-local: @PACKAGE_TARNAME@.pc
+	@if ! test -f $(pkg_config_file); then			\
+		echo 'pkg-config file missing: failing...';	\
+		return 1;					\
+	else							\
+		echo 'pkg-config file has been generated: ok.';	\
+	fi
diff --git a/build-aux/pkg-config.pc.in b/build-aux/pkg-config.pc.in
index 3ab185d..0670c39 100644
--- a/build-aux/pkg-config.pc.in
+++ b/build-aux/pkg-config.pc.in
@@ -6,8 +6,11 @@ datarootdir=@datarootdir@
 docdir=@datarootdir@/doc/@PACKAGE_TARNAME@
 
 Name: @PACKAGE@
-Description:
+Description: @PKGCONFIG_DESCRIPTION@
+URL: http://roboptim.sourceforge.net/
 Version: @VERSION@
-Requires: @PACKAGE_REQD@
-Libs: -L${libdir} -lroboptim-trajectory
-Cflags: -I${includedir}
+Requires: @PKGCONFIG_REQUIRES@
+Conflicts: @PKGCONFIG_CONFLICTS@
+Libs: -L${libdir} @PKGCONFIG_LIBS@
+Libs.private:
+Cflags: -I${includedir} @PKGCONFIG_CFLAGS@
diff --git a/build-aux/rpm.mk b/build-aux/rpm.mk
index 65c82d9..1a7160d 100644
--- a/build-aux/rpm.mk
+++ b/build-aux/rpm.mk
@@ -30,11 +30,11 @@ install-rpm-tree:
 	  echo "Please define RPM_TREE.";	\
           exit 1;				\
 	fi
-	$(MKDIR_P) $$RPM_TREE/BUILD
-	$(MKDIR_P) $$RPM_TREE/RPMS
-	$(MKDIR_P) $$RPM_TREE/SOURCES
-	$(MKDIR_P) $$RPM_TREE/SPECS
-	$(MKDIR_P) $$RPM_TREE/SRPMS
+	$(mkdir_p) $$RPM_TREE/BUILD
+	$(mkdir_p) $$RPM_TREE/RPMS
+	$(mkdir_p) $$RPM_TREE/SOURCES
+	$(mkdir_p) $$RPM_TREE/SPECS
+	$(mkdir_p) $$RPM_TREE/SRPMS
 
 install-rpm-tarball:
 	@if test "x$$RPM_TREE" = "x"; then	\
diff --git a/configure.ac b/configure.ac
index 75dbc02..e2c0c09 100644
--- a/configure.ac
+++ b/configure.ac
@@ -52,15 +52,25 @@ AC_PROG_MKDIR_P
 AC_PROG_SED
 
 # Search for Doxygen.
-AC_ARG_VAR([DOXYGEN], [the Doxygen documentation generation program])
-AC_CHECK_PROGS([DOXYGEN], [doxygen])
+JRL_PROG_DOXYGEN
 
 # Search for Libtool.
 LT_INIT([dlopen])
 
 # Search for RobOptim core.
 ROBOPTIM_CORE_PKG_CONFIG([roboptim-core >= 0.2])
-AC_SUBST([PACKAGE_REQD], ["roboptim-core >= 0.2"])
+
+
+## ------------ ##
+## Pkg-config.  ##
+## ------------ ##
+
+AC_SUBST([PKGCONFIG_DESCRIPTION], ['RobOptim core library'])
+AC_SUBST([PKGCONFIG_REQUIRES], ["roboptim-core >= 0.2"])
+AC_SUBST([PKGCONFIG_CONFLICTS], [])
+AC_SUBST([PKGCONFIG_LIBS], [-lroboptim-core])
+AC_SUBST([PKGCONFIG_CFLAGS], [])
+
 
 ## ------------ ##
 ## Test-suite.  ##
@@ -88,9 +98,5 @@ AC_CONFIG_FILES([
     tests/package.m4
 ])
 
-AC_CONFIG_FILES([doc/Doxyfile])
-
-AC_CONFIG_FILES([doc/sf-upload.sh], [chmod +x doc/sf-upload.sh])
-
 # Write files.
 AC_OUTPUT
diff --git a/doc/Doxyfile.in b/doc/Doxyfile.in
index 913ce28..fd90e82 100644
--- a/doc/Doxyfile.in
+++ b/doc/Doxyfile.in
@@ -1,4 +1,4 @@
-# Doxyfile 1.5.4
+# Doxyfile 1.5.8
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project
@@ -14,11 +14,11 @@
 # Project related configuration options
 #---------------------------------------------------------------------------
 
-# This tag specifies the encoding used for all characters in the config file that
-# follow. The default is UTF-8 which is also the encoding used for all text before
-# the first occurrence of this tag. Doxygen uses libiconv (or the iconv built into
-# libc) for the transcoding. See http://www.gnu.org/software/libiconv for the list of
-# possible encodings.
+# This tag specifies the encoding used for all characters in the config file
+# that follow. The default is UTF-8 which is also the encoding used for all
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the
+# iconv built into libc) for the transcoding. See
+# http://www.gnu.org/software/libiconv for the list of possible encodings.
 
 DOXYFILE_ENCODING      = UTF-8
 
@@ -54,10 +54,11 @@ CREATE_SUBDIRS         = NO
 # information to generate all constant output in the proper language.
 # The default language is English, other supported languages are:
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
-# Croatian, Czech, Danish, Dutch, Finnish, French, German, Greek, Hungarian,
-# Italian, Japanese, Japanese-en (Japanese with English messages), Korean,
-# Korean-en, Lithuanian, Norwegian, Polish, Portuguese, Romanian, Russian,
-# Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian.
+# Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek,
+# Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages),
+# Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish,
+# Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene,
+# Spanish, Swedish, and Ukrainian.
 
 OUTPUT_LANGUAGE        = English
 
@@ -154,13 +155,6 @@ QT_AUTOBRIEF           = NO
 
 MULTILINE_CPP_IS_BRIEF = NO
 
-# If the DETAILS_AT_TOP tag is set to YES then Doxygen
-# will output the detailed description near the top, like JavaDoc.
-# If set to NO, the detailed description appears after the member
-# documentation.
-
-DETAILS_AT_TOP         = NO
-
 # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
 # member inherits the documentation from any documented member that it
 # re-implements.
@@ -195,14 +189,37 @@ ALIASES                =
 OPTIMIZE_OUTPUT_FOR_C  = NO
 
 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
-# sources only. Doxygen will then generate output that is more tailored for Java.
-# For instance, namespaces will be presented as packages, qualified scopes
-# will look different, etc.
+# sources only. Doxygen will then generate output that is more tailored for
+# Java. For instance, namespaces will be presented as packages, qualified
+# scopes will look different, etc.
 
 OPTIMIZE_OUTPUT_JAVA   = NO
 
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want to
-# include (a tag file for) the STL sources as input, then you should
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
+# sources only. Doxygen will then generate output that is more tailored for
+# Fortran.
+
+OPTIMIZE_FOR_FORTRAN   = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
+# sources. Doxygen will then generate output that is tailored for
+# VHDL.
+
+OPTIMIZE_OUTPUT_VHDL   = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it parses.
+# With this tag you can assign which parser to use for a given extension.
+# Doxygen has a built-in mapping, but you can override or extend it using this tag.
+# The format is ext=language, where ext is a file extension, and language is one of
+# the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP,
+# Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat
+# .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran),
+# use: inc=Fortran f=C
+
+EXTENSION_MAPPING      =
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should
 # set this tag to YES in order to let doxygen match functions declarations and
 # definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
 # func(std::string) {}). This also make the inheritance and collaboration
@@ -221,6 +238,15 @@ CPP_CLI_SUPPORT        = NO
 
 SIP_SUPPORT            = NO
 
+# For Microsoft's IDL there are propget and propput attributes to indicate getter
+# and setter methods for a property. Setting this option to YES (the default)
+# will make doxygen to replace the get and set methods by a property in the
+# documentation. This will only work if the methods are indeed getting or
+# setting a simple type. If this is not the case, or you want to show the
+# methods anyway, you should set this option to NO.
+
+IDL_PROPERTY_SUPPORT   = YES
+
 # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
 # tag is set to YES, then doxygen will reuse the documentation of the first
 # member in the group (if any) for the other members of the group. By default
@@ -236,16 +262,32 @@ DISTRIBUTE_GROUP_DOC   = NO
 
 SUBGROUPING            = YES
 
-# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct (or union) is
-# documented as struct with the name of the typedef. So
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
+# is documented as struct, union, or enum with the name of the typedef. So
 # typedef struct TypeS {} TypeT, will appear in the documentation as a struct
 # with name TypeT. When disabled the typedef will appear as a member of a file,
 # namespace, or class. And the struct will be named TypeS. This can typically
-# be useful for C code where the coding convention is that all structs are
-# typedef'ed and only the typedef is referenced never the struct's name.
+# be useful for C code in case the coding convention dictates that all compound
+# types are typedef'ed and only the typedef is referenced, never the tag name.
 
 TYPEDEF_HIDES_STRUCT   = NO
 
+# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
+# determine which symbols to keep in memory and which to flush to disk.
+# When the cache is full, less often used symbols will be written to disk.
+# For small to medium size projects (<1000 input files) the default value is
+# probably good enough. For larger projects a too small cache size can cause
+# doxygen to be busy swapping symbols to and from disk most of the time
+# causing a significant performance penality.
+# If the system has enough physical memory increasing the cache will improve the
+# performance by keeping more symbols in memory. Note that the value works on
+# a logarithmic scale so increasing the size by one will rougly double the
+# memory usage. The cache size is given by this formula:
+# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
+# corresponding to a cache size of 2^16 = 65536 symbols
+
+SYMBOL_CACHE_SIZE      = 0
+
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
@@ -280,10 +322,11 @@ EXTRACT_LOCAL_CLASSES  = YES
 
 EXTRACT_LOCAL_METHODS  = NO
 
-# If this flag is set to YES, the members of anonymous namespaces will be extracted
-# and appear in the documentation as a namespace called 'anonymous_namespace{file}',
-# where file will be replaced with the base name of the file that contains the anonymous
-# namespace. By default anonymous namespace are hidden.
+# If this flag is set to YES, the members of anonymous namespaces will be
+# extracted and appear in the documentation as a namespace called
+# 'anonymous_namespace{file}', where file will be replaced with the base
+# name of the file that contains the anonymous namespace. By default
+# anonymous namespace are hidden.
 
 EXTRACT_ANON_NSPACES   = NO
 
@@ -362,6 +405,12 @@ SORT_MEMBER_DOCS       = YES
 
 SORT_BRIEF_DOCS        = NO
 
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
+# hierarchy of group names into alphabetical order. If set to NO (the default)
+# the group names will appear in their defined order.
+
+SORT_GROUP_NAMES       = NO
+
 # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
 # sorted by fully-qualified names, including namespaces. If set to
 # NO (the default), the class list will be sorted only by class name,
@@ -423,9 +472,22 @@ SHOW_USED_FILES        = NO
 
 SHOW_DIRECTORIES       = NO
 
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page.
+# This will remove the Files entry from the Quick Index and from the
+# Folder Tree View (if specified). The default is YES.
+
+SHOW_FILES             = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the
+# Namespaces page.
+# This will remove the Namespaces entry from the Quick Index
+# and from the Folder Tree View (if specified). The default is YES.
+
+SHOW_NAMESPACES        = YES
+
 # The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from the
-# version control system). Doxygen will invoke the program by executing (via
+# doxygen should invoke to get the current version for each file (typically from
+# the version control system). Doxygen will invoke the program by executing (via
 # popen()) the command <command> <input-file>, where <command> is the value of
 # the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
 # provided by doxygen. Whatever the program writes to standard output
@@ -433,6 +495,15 @@ SHOW_DIRECTORIES       = NO
 
 FILE_VERSION_FILTER    =
 
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by
+# doxygen. The layout file controls the global structure of the generated output files
+# in an output format independent way. The create the layout file that represents
+# doxygen's defaults, run doxygen with the -l option. You can optionally specify a
+# file name after the option, if omitted DoxygenLayout.xml will be used as the name
+# of the layout file.
+
+LAYOUT_FILE            =
+
 #---------------------------------------------------------------------------
 # configuration options related to warning and progress messages
 #---------------------------------------------------------------------------
@@ -493,12 +564,14 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  =  @top_srcdir@/include @top_srcdir@/src
+INPUT                  = @abs_top_srcdir@/include \
+                         @abs_top_srcdir@/src
 
-# This tag can be used to specify the character encoding of the source files that
-# doxygen parses. Internally doxygen uses the UTF-8 encoding, which is also the default
-# input encoding. Doxygen uses libiconv (or the iconv built into libc) for the transcoding.
-# See http://www.gnu.org/software/libiconv for the list of possible encodings.
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
+# also the default input encoding. Doxygen uses libiconv (or the iconv built
+# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
+# the list of possible encodings.
 
 INPUT_ENCODING         = UTF-8
 
@@ -509,7 +582,10 @@ INPUT_ENCODING         = UTF-8
 # *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
 # *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
 
-FILE_PATTERNS          = *.cc *.hh *.hxx *.ice
+FILE_PATTERNS          = *.cc \
+                         *.hh \
+                         *.hxx \
+                         *.ice
 
 # The RECURSIVE tag can be used to turn specify whether or not subdirectories
 # should be searched for input files as well. Possible values are YES and NO.
@@ -521,9 +597,9 @@ RECURSIVE              = YES
 # excluded from the INPUT source files. This way you can easily exclude a
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 
-EXCLUDE                = @top_builddir@/packages \
-                         @top_builddir@/doc      \
-                         @top_builddir@/@PACKAGE_TARNAME@-@PACKAGE_VERSION@
+EXCLUDE                = @abs_top_builddir@/packages \
+                         @abs_top_builddir@/doc \
+                         @abs_top_builddir@/@PACKAGE_TARNAME@-@PACKAGE_VERSION@
 
 # The EXCLUDE_SYMLINKS tag can be used select whether or not files or
 # directories that are symbolic links (a Unix filesystem feature) are excluded
@@ -540,9 +616,10 @@ EXCLUDE_SYMLINKS       = NO
 EXCLUDE_PATTERNS       =
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-# (namespaces, classes, functions, etc.) that should be excluded from the output.
-# The symbol name can be a fully qualified name, a word, or if the wildcard * is used,
-# a substring. Examples: ANamespace, AClass, AClass::ANamespace, ANamespace::*Test
+# (namespaces, classes, functions, etc.) that should be excluded from the
+# output. The symbol name can be a fully qualified name, a word, or if the
+# wildcard * is used, a substring. Examples: ANamespace, AClass,
+# AClass::ANamespace, ANamespace::*Test
 
 EXCLUDE_SYMBOLS        = roboptim::detail
 
@@ -550,7 +627,7 @@ EXCLUDE_SYMBOLS        = roboptim::detail
 # directories that contain example code fragments that are included (see
 # the \include command).
 
-EXAMPLE_PATH           = @top_srcdir@/tests
+EXAMPLE_PATH           = @abs_top_srcdir@/tests
 
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
@@ -570,21 +647,24 @@ EXAMPLE_RECURSIVE      = NO
 # directories that contain image that are included in the documentation (see
 # the \image command).
 
-IMAGE_PATH             =
+IMAGE_PATH             = @abs_top_srcdir@/doc
 
 # The INPUT_FILTER tag can be used to specify a program that doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
 # by executing (via popen()) the command <filter> <input-file>, where <filter>
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
-# to standard output.  If FILTER_PATTERNS is specified, this tag will be
+# to standard output.
+# If FILTER_PATTERNS is specified, this tag will be
 # ignored.
 
 INPUT_FILTER           =
 
 # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
-# basis.  Doxygen will compare the file name with each pattern and apply the
-# filter if there is a match.  The filters are a list of the form:
+# basis.
+# Doxygen will compare the file name with each pattern and apply the
+# filter if there is a match.
+# The filters are a list of the form:
 # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
 # info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
 # is applied to all files.
@@ -604,9 +684,7 @@ FILTER_SOURCE_FILES    = NO
 # If the SOURCE_BROWSER tag is set to YES then a list of source files will
 # be generated. Documented entities will be cross-referenced with these sources.
 # Note: To get rid of all source code in the generated output, make sure also
-# VERBATIM_HEADERS is set to NO. If you have enabled CALL_GRAPH or CALLER_GRAPH
-# then you must also enable this option. If you don't then doxygen will produce
-# a warning and turn it on anyway
+# VERBATIM_HEADERS is set to NO.
 
 SOURCE_BROWSER         = NO
 
@@ -621,13 +699,13 @@ INLINE_SOURCES         = NO
 
 STRIP_CODE_COMMENTS    = YES
 
-# If the REFERENCED_BY_RELATION tag is set to YES (the default)
+# If the REFERENCED_BY_RELATION tag is set to YES
 # then for each documented function all documented
 # functions referencing it will be listed.
 
 REFERENCED_BY_RELATION = YES
 
-# If the REFERENCES_RELATION tag is set to YES (the default)
+# If the REFERENCES_RELATION tag is set to YES
 # then for each documented function all documented entities
 # called/used by that function will be listed.
 
@@ -636,7 +714,8 @@ REFERENCES_RELATION    = YES
 # If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
 # and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
 # functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
-# link to the source code.  Otherwise they will link to the documentstion.
+# link to the source code.
+# Otherwise they will link to the documentation.
 
 REFERENCES_LINK_SOURCE = YES
 
@@ -702,13 +781,13 @@ HTML_FILE_EXTENSION    = .html
 # each generated HTML page. If it is left blank doxygen will generate a
 # standard header.
 
-HTML_HEADER            = @top_srcdir@/doc/header.html
+HTML_HEADER            = @abs_top_srcdir@/doc/header.html
 
 # The HTML_FOOTER tag can be used to specify a personal HTML footer for
 # each generated HTML page. If it is left blank doxygen will generate a
 # standard footer.
 
-HTML_FOOTER            = @top_srcdir@/doc/footer.html
+HTML_FOOTER            = @abs_top_srcdir@/doc/footer.html
 
 # The HTML_STYLESHEET tag can be used to specify a user-defined cascading
 # style sheet that is used by each HTML page. It can be used to
@@ -717,7 +796,7 @@ HTML_FOOTER            = @top_srcdir@/doc/footer.html
 # the style sheet file to the HTML output directory, so don't put your own
 # stylesheet in the HTML output directory as well, or it will be erased!
 
-HTML_STYLESHEET        = @top_srcdir@/doc/package.css
+HTML_STYLESHEET        = @abs_top_srcdir@/doc/package.css
 
 # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
 # files or namespaces will be aligned in HTML using tables. If set to
@@ -725,13 +804,6 @@ HTML_STYLESHEET        = @top_srcdir@/doc/package.css
 
 HTML_ALIGN_MEMBERS     = YES
 
-# If the GENERATE_HTMLHELP tag is set to YES, additional index files
-# will be generated that can be used as input for tools like the
-# Microsoft HTML help workshop to generate a compressed HTML help file (.chm)
-# of the generated HTML documentation.
-
-GENERATE_HTMLHELP      = NO
-
 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
 # documentation will contain sections that can be hidden and shown after the
 # page has loaded. For this to work a browser that supports
@@ -740,6 +812,39 @@ GENERATE_HTMLHELP      = NO
 
 HTML_DYNAMIC_SECTIONS  = YES
 
+# If the GENERATE_DOCSET tag is set to YES, additional index files
+# will be generated that can be used as input for Apple's Xcode 3
+# integrated development environment, introduced with OSX 10.5 (Leopard).
+# To create a documentation set, doxygen will generate a Makefile in the
+# HTML output directory. Running make will produce the docset in that
+# directory and running "make install" will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
+# it at startup.
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information.
+
+GENERATE_DOCSET        = NO
+
+# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
+# feed. A documentation feed provides an umbrella under which multiple
+# documentation sets from a single provider (such as a company or product suite)
+# can be grouped.
+
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+
+# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
+# should uniquely identify the documentation set bundle. This should be a
+# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
+# will append .docset to the name.
+
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files
+# will be generated that can be used as input for tools like the
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
+# of the generated HTML documentation.
+
+GENERATE_HTMLHELP      = NO
+
 # If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
 # be used to specify the file name of the resulting .chm file. You
 # can add a path in front of the file if the result should not be
@@ -760,6 +865,12 @@ HHC_LOCATION           =
 
 GENERATE_CHI           = NO
 
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
+# is used to encode HtmlHelp index (hhk), content (hhc) and project file
+# content.
+
+CHM_INDEX_ENCODING     =
+
 # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
 # controls whether a binary table of contents is generated (YES) or a
 # normal table of contents (NO) in the .chm file.
@@ -771,6 +882,55 @@ BINARY_TOC             = NO
 
 TOC_EXPAND             = NO
 
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER
+# are set, an additional index file will be generated that can be used as input for
+# Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated
+# HTML documentation.
+
+GENERATE_QHP           = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can
+# be used to specify the file name of the resulting .qch file.
+# The path specified is relative to the HTML output folder.
+
+QCH_FILE               =
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
+# http://doc.trolltech.com/qthelpproject.html#namespace
+
+QHP_NAMESPACE          =
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
+# http://doc.trolltech.com/qthelpproject.html#virtual-folders
+
+QHP_VIRTUAL_FOLDER     = doc
+
+# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add.
+# For more information please see
+# http://doc.trolltech.com/qthelpproject.html#custom-filters
+
+QHP_CUST_FILTER_NAME   =
+
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help Project / Custom Filters</a>.
+
+QHP_CUST_FILTER_ATTRS  =
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's
+# filter section matches.
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help Project / Filter Attributes</a>.
+
+QHP_SECT_FILTER_ATTRS  =
+
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
+# be used to specify the location of Qt's qhelpgenerator.
+# If non-empty doxygen will try to run qhelpgenerator on the generated
+# .qhp file.
+
+QHG_LOCATION           =
+
 # The DISABLE_INDEX tag can be used to turn on/off the condensed index at
 # top of each HTML page. The value NO (the default) enables the index and
 # the value YES disables it.
@@ -782,12 +942,20 @@ DISABLE_INDEX          = NO
 
 ENUM_VALUES_PER_LINE   = 4
 
-# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be
-# generated containing a tree-like index structure (just like the one that
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information.
+# If the tag value is set to FRAME, a side panel will be generated
+# containing a tree-like index structure (just like the one that
 # is generated for HTML Help). For this to work a browser that supports
 # JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+,
 # Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are
-# probably better off using the HTML help feature.
+# probably better off using the HTML help feature. Other possible values
+# for this tag are: HIERARCHIES, which will generate the Groups, Directories,
+# and Class Hierarchy pages using a tree view instead of an ordered list;
+# ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which
+# disables this behavior completely. For backwards compatibility with previous
+# releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE
+# respectively.
 
 GENERATE_TREEVIEW      = YES
 
@@ -797,6 +965,14 @@ GENERATE_TREEVIEW      = YES
 
 TREEVIEW_WIDTH         = 250
 
+# Use this tag to change the font size of Latex formulas included
+# as images in the HTML documentation. The default is 10. Note that
+# when you change the font size after a successful doxygen run you need
+# to manually remove any form_*.png images from the HTML output directory
+# to force them to be regenerated.
+
+FORMULA_FONTSIZE       = 10
+
 #---------------------------------------------------------------------------
 # configuration options related to the LaTeX output
 #---------------------------------------------------------------------------
@@ -1009,8 +1185,10 @@ GENERATE_PERLMOD       = NO
 PERLMOD_LATEX          = NO
 
 # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
-# nicely formatted so it can be parsed by a human reader.  This is useful
-# if you want to understand what is going on.  On the other hand, if this
+# nicely formatted so it can be parsed by a human reader.
+# This is useful
+# if you want to understand what is going on.
+# On the other hand, if this
 # tag is set to NO the size of the Perl module output will be much smaller
 # and Perl will parse it just the same.
 
@@ -1097,9 +1275,11 @@ SKIP_FUNCTION_MACROS   = YES
 # Optionally an initial location of the external documentation
 # can be added for each tagfile. The format of a tag file without
 # this location is as follows:
-#   TAGFILES = file1 file2 ...
+#
+# TAGFILES = file1 file2 ...
 # Adding location for the tag files is done as follows:
-#   TAGFILES = file1=loc1 "file2 = loc2" ...
+#
+# TAGFILES = file1=loc1 "file2 = loc2" ...
 # where "loc1" and "loc2" can be relative or absolute paths or
 # URLs. If a location is present for each tag, the installdox tool
 # does not have to be run to correct the links.
@@ -1108,8 +1288,7 @@ SKIP_FUNCTION_MACROS   = YES
 # If a tag file is not located in the directory in which doxygen
 # is run, you must also specify the path to the tagfile here.
 
-TAGFILES               = \
-	@ROBOPTIMCORE_DOCDIR@/html/roboptim-core.doxytag=@ROBOPTIMCORE_DOCDIR@/html
+TAGFILES               =
 
 # When a file name is specified after GENERATE_TAGFILE, doxygen will create
 # a tag file that is based on the input files it reads.
@@ -1131,7 +1310,7 @@ EXTERNAL_GROUPS        = YES
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
-PERL_PATH              = /usr/bin/perl
+PERL_PATH              = @PERL@
 
 #---------------------------------------------------------------------------
 # Configuration options related to the dot tool
@@ -1147,10 +1326,11 @@ PERL_PATH              = /usr/bin/perl
 CLASS_DIAGRAMS         = YES
 
 # You can define message sequence charts within doxygen comments using the \msc
-# command. Doxygen will then run the mscgen tool (see http://www.mcternan.me.uk/mscgen/) to
-# produce the chart and insert it in the documentation. The MSCGEN_PATH tag allows you to
-# specify the directory where the mscgen tool resides. If left empty the tool is assumed to
-# be found in the default search path.
+# command. Doxygen will then run the mscgen tool (see
+# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where
+# the mscgen tool resides. If left empty the tool is assumed to be found in the
+# default search path.
 
 MSCGEN_PATH            =
 
@@ -1165,7 +1345,30 @@ HIDE_UNDOC_RELATIONS   = YES
 # toolkit from AT&T and Lucent Bell Labs. The other options in this section
 # have no effect if this option is set to NO (the default)
 
-HAVE_DOT               = YES
+HAVE_DOT               = @HAVE_DOT@
+
+# By default doxygen will write a font called FreeSans.ttf to the output
+# directory and reference it in all dot files that doxygen generates. This
+# font does not include all possible unicode characters however, so when you need
+# these (or just want a differently looking font) you can specify the font name
+# using DOT_FONTNAME. You need need to make sure dot is able to find the font,
+# which can be done by putting it in a standard location or by setting the
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
+# containing the font.
+
+DOT_FONTNAME           = FreeSans
+
+# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
+# The default size is 10pt.
+
+DOT_FONTSIZE           = 10
+
+# By default doxygen will tell dot to use the output directory to look for the
+# FreeSans.ttf font (which doxygen will put there itself). If you specify a
+# different font using DOT_FONTNAME you can set the path where dot
+# can find it using this tag.
+
+DOT_FONTPATH           =
 
 # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for each documented class showing the direct and
@@ -1211,19 +1414,19 @@ INCLUDE_GRAPH          = YES
 
 INCLUDED_BY_GRAPH      = YES
 
-# If the CALL_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will
-# generate a call dependency graph for every global function or class method.
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable call graphs for selected
-# functions only using the \callgraph command.
+# If the CALL_GRAPH and HAVE_DOT options are set to YES then
+# doxygen will generate a call dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable call graphs
+# for selected functions only using the \callgraph command.
 
 CALL_GRAPH             = NO
 
-# If the CALLER_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will
-# generate a caller dependency graph for every global function or class method.
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable caller graphs for selected
-# functions only using the \callergraph command.
+# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
+# doxygen will generate a caller dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable caller
+# graphs for selected functions only using the \callergraph command.
 
 CALLER_GRAPH           = NO
 
@@ -1256,12 +1459,12 @@ DOT_PATH               =
 
 DOTFILE_DIRS           =
 
-# The MAX_DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
 # nodes that will be shown in the graph. If the number of nodes in a graph
 # becomes larger than this value, doxygen will truncate the graph, which is
-# visualized by representing a node as a red box. Note that doxygen if the number
-# of direct children of the root node in a graph is already larger than
-# MAX_DOT_GRAPH_NOTES then the graph will not be shown at all. Also note
+# visualized by representing a node as a red box. Note that doxygen if the
+# number of direct children of the root node in a graph is already larger than
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
 # that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
 
 DOT_GRAPH_MAX_NODES    = 50
@@ -1277,10 +1480,10 @@ DOT_GRAPH_MAX_NODES    = 50
 MAX_DOT_GRAPH_DEPTH    = 0
 
 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
-# background. This is disabled by default, which results in a white background.
-# Warning: Depending on the platform used, enabling this option may lead to
-# badly anti-aliased labels on the edges of a graph (i.e. they become hard to
-# read).
+# background. This is disabled by default, because dot on Windows does not
+# seem to support this out of the box. Warning: Depending on the platform used,
+# enabling this option may lead to badly anti-aliased labels on the edges of
+# a graph (i.e. they become hard to read).
 
 DOT_TRANSPARENT        = YES
 
@@ -1304,7 +1507,7 @@ GENERATE_LEGEND        = YES
 DOT_CLEANUP            = YES
 
 #---------------------------------------------------------------------------
-# Configuration::additions related to the search engine
+# Options related to the search engine
 #---------------------------------------------------------------------------
 
 # The SEARCHENGINE tag specifies whether or not a search engine should be
diff --git a/doc/Makefile.am b/doc/Makefile.am
index c5139b7..cd1b864 100644
--- a/doc/Makefile.am
+++ b/doc/Makefile.am
@@ -1,25 +1,57 @@
-.PHONY: doc html install-doxygen-html uninstall-doxygen-html
-
+include $(top_srcdir)/build-aux/init.mk
+
+# Variables.
+EXTRA_DIST += 				\
+	Doxyfile.in 			\
+	header.html 			\
+	footer.html 			\
+	package.css 			\
+	doxygen.css			\
+	tabs.css			\
+	sf-upload.sh.in
+
+CLEANFILES +=				\
+	$(PACKAGE_TARNAME).doxytag 	\
+	Doxyfile			\
+	config.log
+
+
+.PHONY: doc				\
+	html				\
+	doxygen 			\
+	install-doxygen-html		\
+	uninstall-doxygen-html
+
+# Rules.
 doc: html
 
-html-local: Doxyfile
-	$(DOXYGEN)
+html-local: doxygen
 
-EXTRA_DIST = Doxyfile.in header.html footer.html \
-	package.css doxygen.css tabs.css sf-upload.sh.in
+doxygen: Doxyfile
+	$(DOXYGEN) "$<"
 
-CLEANFILES = $(PACKAGE_TARNAME).doxytag
+# Doxygen generation rule.
+Doxyfile: $(srcdir)/Doxyfile.in
+	$(top_builddir)/config.status --file="$@":"$<" \
+	&& sed -i -e 's/^#.*//' -e '/^$$/d' "$@"
 
+# Clean rule.
 clean-local:
 	rm -rf html latex
 
+# Install rules.
 install-data-local: install-doxygen-html
 uninstall-local: uninstall-doxygen-html
 
 install-doxygen-html: html-local
-	$(mkdir_p) "$(DESTDIR)$(htmldir)/html"
-	cp -rf html/* "$(DESTDIR)$(htmldir)/html"
+	$(mkdir_p) "$(DESTDIR)$(htmldir)"
+	cp -rf html "$(DESTDIR)$(htmldir)"
 	$(INSTALL_DATA) $(PACKAGE_TARNAME).doxytag "$(DESTDIR)$(htmldir)/html"
 
 uninstall-doxygen-html:
 	rm -rf "$(DESTDIR)$(htmldir)"
+
+# --- SourceForge upload script.
+# sf-upload.sh generation rule.
+sf-upload.sh: $(srcdir)/sf-upload.sh.in
+	$(top_builddir)/config.status --file="$@":"$<" && chmod 755 "$@"
diff --git a/doc/sf-upload.sh.in b/doc/sf-upload.sh.in
index 52bcb10..62f902b 100644
--- a/doc/sf-upload.sh.in
+++ b/doc/sf-upload.sh.in
@@ -16,7 +16,7 @@
 #
 # Then launch the script. It will prompt for your password
 # and upload the documentation in a @PACKAGE_TARNAME@ folder.
-
+set -e
 
 rsync=$(which rsync)
 
@@ -31,12 +31,26 @@ if test "x$SF_USERNAME" = x; then
  exit 2
 fi
 
-echo "Fixing permissions."
-chmod 755 @abs_builddir@/html && chmod 644 @abs_builddir@/html/*
+if test "x$VERSION" = x; then
+ echo "No version set, defaulting to \`\`HEAD''."
+ VERSION=HEAD
+fi
+
+rsync_cmd="$rsync -avP -e ssh"
+localdir="@abs_top_builddir@/doc/html/"
+pkgname=$(echo '@PACKAGE_TARNAME@' | sed 's|^roboptim-||')
+remotedir="htdocs/doc/$pkgname/$VERSION"
+rsync_loghost="$SF_USERNAME,rob...@we...:"
+
+echo "Fixing local rights.";
+chmod 755 "$localdir"
+find "$localdir" -type d -print0 | xargs -0 chmod 755
+find "$localdir" -type f -print0 | xargs -0 chmod 644
 
-echo "Uploading documentation to SourceForge server, please wait.";
-$rsync -avP -e ssh @abs_builddir@/html/ \
-    $SF_USERNAME,rob...@we...:htdocs/doc/trajectory/HEAD/
+echo "Uploading documentation to SourceForge server.";
+$rsync_cmd "$localdir" "$rsync_loghost$remotedir"
+#echo "Fixing documentation rights.";
+#echo "cd \"$remotedir\"; chmod 644 *" | $rsync_cmd "$rsync_loghost$remotedir"
 ret="$?";
 if test 0 -eq "$ret"; then
  echo "Done. Exiting";

-----------------------------------------------------------------------

Summary of changes:
 ChangeLog                                  |   16 ++
 build-aux/boost.m4                         |    9 +-
 build-aux/deb.mk                           |   18 +-
 build-aux/{roboptim-core.m4 => doxygen.m4} |   52 +++--
 build-aux/ebuild.mk                        |    2 +-
 build-aux/init.mk                          |    3 +
 build-aux/pkg-config.mk                    |   83 ++++++
 build-aux/pkg-config.pc.in                 |   11 +-
 build-aux/rpm.mk                           |   10 +-
 configure.ac                               |   20 +-
 doc/Doxyfile.in                            |  401 +++++++++++++++++++++-------
 doc/Makefile.am                            |   50 +++-
 doc/sf-upload.sh.in                        |   26 ++-
 13 files changed, 544 insertions(+), 157 deletions(-)
 copy build-aux/{roboptim-core.m4 => doxygen.m4} (59%)
 create mode 100644 build-aux/pkg-config.mk


hooks/post-receive
-- 
roboptim




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