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From: Julian U. <jul...@ru...> - 2020-02-13 11:27:56
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Hej all, I also had another meeting and did not see the mail early enough, sorry. But I thought we have the calls on the third Wednesday each month. So, is it the 2nd or 3rd for future calls and my schedule? Best, Julian On 12.02.20 14:45, Tabb, David, Prof [dt...@su...] wrote: > Hi, all. > > At today’s call, I’d like to discuss the following: > > 1. Attendance at San Diego HUPO-PSI for our working group (see below): > http://www.psidev.info/hupo-psi-meeting-2020 > 2. Examples of MSstats QC output: https://msstats.org/datasets/ > 3. Current status of specification document for mzQC: > https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing > > 4. Progress of new CV term requests for SwaMe et al: > https://github.com/HUPO-PSI/mzQC/blob/master/cv/qc-cv.obo > > Current projected attendance at San Diego: > Tabb: attending > > Walzer: not attending > > Bittremieux: attending (home city) > > Brack: attending > > Dogu: not attending > > Bielow: not attending > > Salek: not attending > > Uszkoreit: not attending > > I look forward to chatting with you all in 17 minutes! > > Dave > > <http://www.sun.ac.za/english/about-us/strategic-documents> > > The integrity and confidentiality of this email are governed by these > terms. Disclaimer <http://www.sun.ac.za/emaildisclaimer > > Die integriteit en vertroulikheid van hierdie e-pos word deur die > volgende bepalings bereël. Vrywaringsklousule > <http://www.sun.ac.za/emaildisclaimer > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev > |
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From: Paul B. <pau...@ma...> - 2020-02-13 11:20:45
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Hi all, Sorry I missed the call yesterday, I had a clash with another meeting. Got a quick question - I have 10 or so new metrics I'd like added to the CV. Should I add each one as an individual issue on the GitHub or should I add them as a whole so you can see them in context of each other? Thanks! Paul From: Tabb, David, Prof [dt...@su...] [mailto:dt...@su...] Sent: 12 February 2020 13:46 To: psi...@li... Subject: [Psidev-qc-dev] Agenda for today Hi, all. At today's call, I'd like to discuss the following: 1) Attendance at San Diego HUPO-PSI for our working group (see below): http://www.psidev.info/hupo-psi-meeting-2020 2) Examples of MSstats QC output: https://msstats.org/datasets/ 3) Current status of specification document for mzQC: https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing 4) Progress of new CV term requests for SwaMe et al: https://github.com/HUPO-PSI/mzQC/blob/master/cv/qc-cv.obo Current projected attendance at San Diego: Tabb: attending Walzer: not attending Bittremieux: attending (home city) Brack: attending Dogu: not attending Bielow: not attending Salek: not attending Uszkoreit: not attending I look forward to chatting with you all in 17 minutes! Dave [Image removed by sender.]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer%20> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bereël. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer%20> |
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From: Tabb, D. P. [<dt...@su...> - 2020-02-12 13:46:07
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Hi, all. At today's call, I'd like to discuss the following: 1. Attendance at San Diego HUPO-PSI for our working group (see below): http://www.psidev.info/hupo-psi-meeting-2020 2. Examples of MSstats QC output: https://msstats.org/datasets/ 3. Current status of specification document for mzQC: https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing 4. Progress of new CV term requests for SwaMe et al: https://github.com/HUPO-PSI/mzQC/blob/master/cv/qc-cv.obo Current projected attendance at San Diego: Tabb: attending Walzer: not attending Bittremieux: attending (home city) Brack: attending Dogu: not attending Bielow: not attending Salek: not attending Uszkoreit: not attending I look forward to chatting with you all in 17 minutes! Dave [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Tabb, D. P. [<dt...@su...> - 2020-02-12 13:34:32
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Am I correct in thinking that we have a call in 27 min? DT Get Outlook for Android<https://aka.ms/ghei36> [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Tabb, D. P. [<dt...@su...> - 2020-01-17 11:50:13
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Hi, All. Mathias mentioned in the minutes that I would volunteer a data set in which a few outlier experiments are apparent. You can find them here: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006843. We published these in a protegenomic assessment of clinical tuberculosis isolates (https://doi.org/10.1021/acs.jproteome.7b00483). Thanks, Dave [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bereël. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Walzer <wa...@eb...> - 2020-01-16 17:01:38
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Dear all, you can find the minutes to our first telco of the year here https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/202001115_telco.md. Please have a look at the actionpoints and feel free to correct where you think it is needed. best, mths On 15/01/2020 10:56, Walzer wrote: > Happy new year everyone, > > and thanks Wout for the notification, I hope you all had a great start > into 2020! > > I'd like to make the agenda a bit more specific. As mentioned in last > years last call, I made the spec doc available on our github and > lately added the missing paragraphs to `5.Relationship to Other > Specifications`. I also added many comments in sections of the > document that are eager to be discussed or long for attention. > > I think RC1 of the document might almost be there but we need two more > efforts, namely Section 6.2 CvParameter Values for metrics needs more > detail (and is closely linked with the creation of examples) and > resolving the comments. Maybe we can go over the document and comments > to find solutions and make concrete which examples will be created. > You can find the document here: > https://github.com/HUPO-PSI/mzQC/blob/spec-doc/spec_doc/mzQC_specDoc_v_0_1_0.docx > > best, > > mths > > On 14/01/2020 17:19, Bittremieux, Wout wrote: >> Dear colleagues, >> >> Apologies for the late notification. I'm at the EuBIC conference in >> Denmark this week and didn't have time to send the mail earlier. >> Unfortunately I won't be able to join the teleconference tomorrow >> either. >> >> This is a reminder that our next teleconference is scheduled for >> Wednesday, January 15th, at 14h00 GMT (14h00 London, 15h00 Western >> Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). >> >> You can connect to our teleconference on Google Hangouts through the >> following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 >> >> I'd like to propose the following agenda items: >> >> - Specification document: latest version, things to do. >> - Example datasets and functionality: iPRG example dataset, identify >> additional example use cases. >> >> Thanks, >> Wout >> >> _______________________________________________ >> Psidev-qc-dev mailing list >> Psi...@li... >> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev > -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
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From: Pauw, M, M. [<pau...@su...> - 2020-01-16 09:39:20
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Hello! I would please like to request the addition of new metrics to mzQC cv and have filled out the relevant form. You will see that many of the metrics overlap with QuaMeter ID-Free, but the N-value differs. For example, where QuaMeter ID-Free may have reported a metric in quartiles, I might now report them in user specified sections/ one value for the entire run. Please feel free to contact me about anything I may not have explained clearly enough/ done incorrectly. Best regards, Marina Sent from Mail<https://go.microsoft.com/fwlink/?LinkId=550986> for Windows 10 [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Walzer <wa...@eb...> - 2020-01-15 10:56:34
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Happy new year everyone, and thanks Wout for the notification, I hope you all had a great start into 2020! I'd like to make the agenda a bit more specific. As mentioned in last years last call, I made the spec doc available on our github and lately added the missing paragraphs to `5.Relationship to Other Specifications`. I also added many comments in sections of the document that are eager to be discussed or long for attention. I think RC1 of the document might almost be there but we need two more efforts, namely Section 6.2 CvParameter Values for metrics needs more detail (and is closely linked with the creation of examples) and resolving the comments. Maybe we can go over the document and comments to find solutions and make concrete which examples will be created. You can find the document here: https://github.com/HUPO-PSI/mzQC/blob/spec-doc/spec_doc/mzQC_specDoc_v_0_1_0.docx best, mths On 14/01/2020 17:19, Bittremieux, Wout wrote: > Dear colleagues, > > Apologies for the late notification. I'm at the EuBIC conference in > Denmark this week and didn't have time to send the mail earlier. > Unfortunately I won't be able to join the teleconference tomorrow either. > > This is a reminder that our next teleconference is scheduled for > Wednesday, January 15th, at 14h00 GMT (14h00 London, 15h00 Western > Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). > > You can connect to our teleconference on Google Hangouts through the > following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 > > I'd like to propose the following agenda items: > > - Specification document: latest version, things to do. > - Example datasets and functionality: iPRG example dataset, identify > additional example use cases. > > Thanks, > Wout > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
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From: Bittremieux, W. <wbi...@he...> - 2020-01-14 17:19:18
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Dear colleagues, Apologies for the late notification. I'm at the EuBIC conference in Denmark this week and didn't have time to send the mail earlier. Unfortunately I won't be able to join the teleconference tomorrow either. This is a reminder that our next teleconference is scheduled for Wednesday, January 15th, at 14h00 GMT (14h00 London, 15h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like to propose the following agenda items: - Specification document: latest version, things to do. - Example datasets and functionality: iPRG example dataset, identify additional example use cases. Thanks, Wout |
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From: Walzer <wa...@eb...> - 2019-12-18 12:41:30
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Dear all, prior to the call, may I draw your attention to an interactive 5min guide to MZQC? I'd be eager to get feedback. https://mybinder.org/v2/gh/bigbio/mzqc-pylib/v0.0.3?filepath=jupyter%2FMZQC_in_5_minutes.ipynb speak to you soon, mths On 18/12/2019 01:55, Bittremieux, Wout wrote: > Dear colleagues, > > Apologies for the late notification. > > This is a reminder that our next teleconference is scheduled for > Wednesday, December 18th, at 14h00 GMT (14h00 London, 15h00 Western > Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). > > You can connect to our teleconference on Google Hangouts through the > following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 > > As several people are in holiday mode already, I'd like to propose a > quick meeting to address the following agenda items: > > - How far along are we on the roadmap to version 1.0 > (https://docs.google.com/spreadsheets/d/1929qzGTuXmIdUTHCqMuLhrYgUh0e6OIejX6fY38QHHU/edit) > and next steps. > - If desired we can continue last month's discussion and delve deeper > into the specification document. > - Briefly have a look at the schedule for the Spring Meeting again > (https://docs.google.com/spreadsheets/d/1xwuceD1mJi3OQeyZCEDTpJc87fOnAYx_sCpYZiWMYt4/edit). > > Thanks, > Wout > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
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From: Bittremieux, W. <wbi...@he...> - 2019-12-18 01:55:33
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Dear colleagues, Apologies for the late notification. This is a reminder that our next teleconference is scheduled for Wednesday, December 18th, at 14h00 GMT (14h00 London, 15h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 As several people are in holiday mode already, I'd like to propose a quick meeting to address the following agenda items: - How far along are we on the roadmap to version 1.0 (https://docs.google.com/spreadsheets/d/1929qzGTuXmIdUTHCqMuLhrYgUh0e6OIejX6fY38QHHU/edit) and next steps. - If desired we can continue last month's discussion and delve deeper into the specification document. - Briefly have a look at the schedule for the Spring Meeting again (https://docs.google.com/spreadsheets/d/1xwuceD1mJi3OQeyZCEDTpJc87fOnAYx_sCpYZiWMYt4/edit). Thanks, Wout |
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From: Bittremieux, W. <wbi...@he...> - 2019-12-05 20:00:38
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-------- Forwarded Message -------- Subject: [Psi-announce] PSI202 Registration open Date: Thu, 5 Dec 2019 17:04:48 +0000 From: Jones, Andy <And...@li...> To: 'psi...@eb...' <psi...@eb...>, Mass spectrometry standard development <psi...@li...>, psi...@li... <psi...@li...>, 'Co...@go...' <Co...@go...>, ps...@eb... <ps...@eb...> Dear all, We are pleased to announce that the 2020 Annual workshop for the Proteomics Standards Initiative (PSI) will take place in San Diego USA, Mon 23^rd to Thurs 26^th March 2020, and registration is now open: http://www.psidev.info/hupo-psi-meeting-2020 <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psidev.info%2Fhupo-psi-meeting-2020&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C09bde2573c7b4d70e7ef08d779a55395%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637111623767446044&sdata=mZ0MVXwp5sXmyyO2GWwC5k6uYHBGhqsthRjV81oswp8%3D&reserved=0> There is no cost to attend the workshop, with lunches, coffee/tea and a workshop dinner included. You will have to cover your own costs for travel and hotels. The workshop will focus on developing data standards related to mass spectrometry for spectral libraries, the Universal Spectrum Identifier, quality control and capturing study metadata, and on the molecular interactions side on mapping standards to Cytoscape. We will be welcoming the new PSI work group – Intrinsically Disordered Proteins (IDP). We are also planning a new session related to standards for glycoproteomics, to scope out the community need in this area. The PSI is always keen to recruit new members, so please join if you think you may be interested in data sharing and standards for proteomics. Please also get in touch, if you are interested to join PSI activities in general but cannot travel to San Diego. Best wishes Andy Jones (PSI Chair) |
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From: Bittremieux, W. <wbi...@he...> - 2019-11-18 21:39:10
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Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, November 20th, at 14h00 GMT (14h00 London, 15h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 6h00 San Diego). Please note that this is a departure from our previous meetings on Thursdays. I hope to talk to all of you on Wednesday. You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items. Mostly we should discuss the drafts and outlines that were discussed during last month's meeting (https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20191017_telco.md): - Discuss the draft for CV request readme. - Discuss the outline of the specification document. - Please communicate in advance any other agenda items that need to be addressed. Thanks, Wout |
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From: Bittremieux, W. <wbi...@he...> - 2019-11-12 19:19:46
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Dear colleagues, I'd like to encourage you again to fill out the Doodle so we can set a new monthly time for our QC working group call and maximize attendance. I'd like to request that you fill in the Doodle this week, so we can schedule our monthly call on the chosen day next week. Thanks, Wout On 31/10/2019 11:01, Wout Bittremieux wrote: > Dear colleagues, > > As we discussed during our latest call, there is a doodle to try to find > a new time for our monthly call: https://doodle.com/poll/nrhiibqmbkcu6uz3 > > I want to encourage you to indicate your preference so we can find a > suitable time to maximize call attendance. (Please disregard the listed > dates, it's the time of day that's relevant.) > > Best, > Wout > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: Wout B. <wbi...@uc...> - 2019-10-31 20:09:53
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Dear colleagues, As we discussed during our latest call, there is a doodle to try to find a new time for our monthly call: https://doodle.com/poll/nrhiibqmbkcu6uz3 I want to encourage you to indicate your preference so we can find a suitable time to maximize call attendance. (Please disregard the listed dates, it's the time of day that's relevant.) Best, Wout |
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From: Wout B. <wbi...@uc...> - 2019-10-18 00:01:12
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Dear colleagues, You can find the meeting notes of today's call here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20191017_telco.md Additionally, here's a doodle to try to find a new meeting time: https://doodle.com/poll/nrhiibqmbkcu6uz3 Please indicate which time slots would work for you to attend our monthly meeting (disregard the dates for this week, the meeting will be held each month). Best, Wout On 15/10/2019 17:25, Wout Bittremieux wrote: > Dear colleagues, > > This is a reminder that our next teleconference is scheduled for > Thursday, October 17th, at 14h00 GMT (15h00 London, 16h00 Western Europe > / Cape Town, 17h00 Turkey, 7h00 San Diego). > > You can connect to our teleconference on Google Hangouts through the > following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 > > I'd like propose the following agenda items: > > - Overview of new CV entry requests by Mathias/Julian. > - CV comments introduced by Julian. > - Start outlining the specification document. > - Please communicate any other agenda items that need to be addressed. > > Thanks, > Wout > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: Tabb, D. P. [<dt...@su...> - 2019-10-17 08:15:41
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I would also suggest we pin down the topics we wish to layer onto the agenda at San Diego in March. Thanks, Dave -----Original Message----- From: Wout Bittremieux <wbi...@uc...> Sent: Wednesday, October 16, 2019 2:26 AM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference Thursday 17/10 Dear colleagues, This is a reminder that our next teleconference is scheduled for Thursday, October 17th, at 14h00 GMT (15h00 London, 16h00 Western Europe / Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items: - Overview of new CV entry requests by Mathias/Julian. - CV comments introduced by Julian. - Start outlining the specification document. - Please communicate any other agenda items that need to be addressed. Thanks, Wout _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bereël. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Tabb, D. P. [<dt...@su...> - 2019-10-17 07:36:00
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Hi, Chris. I am open to a different day. Tuesdays will frequently see me start my drive home from downtown at 3PM, so 4PM could potentially be a tight squeeze. Wednesdays I have a standing meeting at 2PM at the office. Thanks, Dave -----Original Message----- From: Bielow, Chris <Chr...@fu...> Sent: Wednesday, October 16, 2019 6:32 PM To: psi...@li... Subject: Re: [Psidev-qc-dev] Upcoming teleconference Thursday 17/10 Dear all, cannot make it (again) -- my Thursdays afternoon are busy in the foreseeable future. Is there any chance to use Tuesdays or Wednesdays (same time) for future meetings or does that collide with your schedule? (maybe that's something you can discuss tomorrow :)) Cheers Chris -- Dr. Chris Bielow Bioinformatics Solution Center (BSC) www.bsc.fu-berlin.de Freie Universität Berlin, Institut für Informatik, Takustr. 9, room K21, 14195 Berlin Phone: +49 (0)30 838-63084, Email: Chris.Bielow(at)bsc.fu-berlin.de -----Original Message----- From: Wout Bittremieux <wbi...@uc...> Sent: Wednesday, October 16, 2019 2:26 AM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference Thursday 17/10 Dear colleagues, This is a reminder that our next teleconference is scheduled for Thursday, October 17th, at 14h00 GMT (15h00 London, 16h00 Western Europe / Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items: - Overview of new CV entry requests by Mathias/Julian. - CV comments introduced by Julian. - Start outlining the specification document. - Please communicate any other agenda items that need to be addressed. Thanks, Wout _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bereël. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Bielow, C. <Chr...@fu...> - 2019-10-16 16:31:44
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Dear all, cannot make it (again) -- my Thursdays afternoon are busy in the foreseeable future. Is there any chance to use Tuesdays or Wednesdays (same time) for future meetings or does that collide with your schedule? (maybe thats something you can discuss tomorrow :)) Cheers Chris -- Dr. Chris Bielow Bioinformatics Solution Center (BSC) www.bsc.fu-berlin.de Freie Universität Berlin, Institut für Informatik, Takustr. 9, room K21, 14195 Berlin Phone: +49 (0)30 838-63084, Email: Chris.Bielow(at)bsc.fu-berlin.de -----Original Message----- From: Wout Bittremieux <wbi...@uc...> Sent: Wednesday, October 16, 2019 2:26 AM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference Thursday 17/10 Dear colleagues, This is a reminder that our next teleconference is scheduled for Thursday, October 17th, at 14h00 GMT (15h00 London, 16h00 Western Europe / Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items: - Overview of new CV entry requests by Mathias/Julian. - CV comments introduced by Julian. - Start outlining the specification document. - Please communicate any other agenda items that need to be addressed. Thanks, Wout _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: Wout B. <wbi...@uc...> - 2019-10-16 00:26:15
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Dear colleagues, This is a reminder that our next teleconference is scheduled for Thursday, October 17th, at 14h00 GMT (15h00 London, 16h00 Western Europe / Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items: - Overview of new CV entry requests by Mathias/Julian. - CV comments introduced by Julian. - Start outlining the specification document. - Please communicate any other agenda items that need to be addressed. Thanks, Wout |
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From: Tabb, D. P. [<dt...@su...> - 2019-10-02 08:53:45
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Hi, all. Mathias reminded me that I had not yet sent this paper around. We mentioned the value of mzML NativeID as a way to anchor quality metrics to a particular MS/MS scan. I argued that estimating "identifiability" for a spectrum was one use case in which this anchoring would be useful. Ze-Qiang Ma, a talented researcher I trained back at Vanderbilt, once published a paper on our approach to use our DirecTag sequence tagging engine to assess which spectra are most likely to be identified in a RAW file. While DirecTag is maintained code, the ScanRanker interface is not. Just the same, I am sure we could knock together a script to translate a .tags file plus an .mzML file into a mzQC JSON string. Thanks, Dave [http://cdn.sun.ac.za/100/ProductionFooter.jpg]<http://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<http://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<http://www.sun.ac.za/emaildisclaimer> |
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From: Wout B. <wbi...@uc...> - 2019-09-27 00:08:09
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Dear colleagues, You can find the meeting notes of today's call here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20190926_telco.md Best, Wout On 23/09/2019 17:00, Wout Bittremieux wrote: > Dear colleagues, > > This is a reminder that our next teleconference is scheduled for > Thursday, September 26th, at 14h00 GMT (15h00 London, 16h00 Western > Europe / Cape Town, 17h00 Turkey, 7h00 San Diego). > > You can connect to our teleconference on Google Hangouts through the > following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 > > I'd like propose the following agenda items: > > - Conception phase seems more or less finished: final action points. > - Documentation phase: > - Website (including PR #82). > - Documentation: specification document, implementation/validation > document. > - Please communicate any other agenda items that need to be addressed. > > Thanks, > Wout > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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