Menu
▾
▴
psidev-qc-dev — PSI-QC working group mailinglist
You can subscribe to this list here.
| 2016 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(11) |
Jun
(14) |
Jul
|
Aug
(11) |
Sep
|
Oct
(4) |
Nov
(15) |
Dec
(1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2017 |
Jan
(1) |
Feb
(9) |
Mar
(2) |
Apr
(2) |
May
(6) |
Jun
(7) |
Jul
(10) |
Aug
(4) |
Sep
(15) |
Oct
(9) |
Nov
(5) |
Dec
(7) |
| 2018 |
Jan
(5) |
Feb
(7) |
Mar
(3) |
Apr
(15) |
May
(5) |
Jun
(4) |
Jul
(4) |
Aug
(2) |
Sep
(4) |
Oct
(8) |
Nov
(6) |
Dec
(7) |
| 2019 |
Jan
(7) |
Feb
(2) |
Mar
(4) |
Apr
(7) |
May
(5) |
Jun
(6) |
Jul
(11) |
Aug
(5) |
Sep
(4) |
Oct
(7) |
Nov
(3) |
Dec
(4) |
| 2020 |
Jan
(5) |
Feb
(5) |
Mar
(8) |
Apr
(3) |
May
(5) |
Jun
(3) |
Jul
(9) |
Aug
(2) |
Sep
(2) |
Oct
(3) |
Nov
(5) |
Dec
(4) |
| 2021 |
Jan
(3) |
Feb
(4) |
Mar
(2) |
Apr
(4) |
May
(5) |
Jun
(9) |
Jul
(4) |
Aug
(8) |
Sep
(5) |
Oct
(3) |
Nov
(2) |
Dec
(2) |
| 2022 |
Jan
(2) |
Feb
(2) |
Mar
(3) |
Apr
(3) |
May
(4) |
Jun
(5) |
Jul
(5) |
Aug
(4) |
Sep
(6) |
Oct
(2) |
Nov
(5) |
Dec
|
| 2023 |
Jan
(7) |
Feb
(5) |
Mar
(5) |
Apr
(2) |
May
(11) |
Jun
(3) |
Jul
(1) |
Aug
(2) |
Sep
(1) |
Oct
(1) |
Nov
(2) |
Dec
(2) |
| 2024 |
Jan
(2) |
Feb
(3) |
Mar
|
Apr
(2) |
May
(2) |
Jun
(5) |
Jul
(6) |
Aug
(2) |
Sep
(1) |
Oct
(7) |
Nov
(3) |
Dec
(1) |
| 2025 |
Jan
(3) |
Feb
(2) |
Mar
(1) |
Apr
(2) |
May
(2) |
Jun
(1) |
Jul
(3) |
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: Walzer <wa...@eb...> - 2020-07-15 10:45:28
|
Hi all, we'll be a small circle today then. I propose that those who have the time and want to join meet here: meet.google.com/cqx-obbq-mfh so that Wout does not have to keep an eye on the zoom and can focus. I suggest we tailor the agenda to the following two points of the ontology sections of the spec doc and the necessities for a metabolomics example. stay safe and well everyone, mths On 15/07/2020 03:26, Wout Bittremieux via Psidev-qc-dev wrote: > Unfortunately I won't be able to join the call because I'm co-chairing > the CompMS session at ISMB the whole day. (*Maybe* I'll be able to > join the first 10 minutes.) Final preparations for this have taken up > quite some time in the past two weeks as well, so unfortunately I > haven't yet had the time to contribute further to the specification > document. > > I've been thinking about using PURLs or CV references to link quality > metrics to CVs, and I'm starting to favor something that was suggested > two weeks ago: to stick to the old format, but reserve CV namespaces > for the most commonly used CVs. So that would be "QC" for our CV, "MS" > for the MS CV, and "UO" for the unit ontology. These cover the > majority of use cases I think, and if we identify other commonly used > CVs we can still add those as well. > > The advantage of this is that it's possible to efficiently query terms > in these CVs, because the CV keys are fixed. So they essentially > function the same way as the PURLS, without the need of actually > having to use PURLs. For other CVs that aren't reserved a two-query > solution will still be needed, but considering that such queries > should be rare I don't consider that too much of a problem. > A further advantage is that we can avoid the somewhat clunky PURL > specification, don't depend on an external service, and (very > importantly imo!) don't require web lookups to the PURL service (i.e. > essential for doing stuff in firewalled compute environments). > > A small disadvantage would be that to validate these reserved CV keys > we'd need to add explicit functionality in the mzQC Python library to > do so. But this is hardly a showstopper. > > This solution seems to somewhat give us the best of both worlds I > think. It's also nice that we don't need to change the JSON schema. > (Although we should probably still change the CV references in the > JSON schema from a dictionary to a list.) > The only thing would be to clearly document this behavior and the > reserved CV keys in the specification document. > > I think we should also adapt and explicitly document some best > practices that were discussed in function of adapting PURLs: that CV > terms are final and can only ever be deprecated (i.e. an accession > will always point to the same CV term) and that we should document an > official CV versioning scheme. > > Let me know if I've overlooked something here. > > Best, > Wout > > On 14/07/2020 19:05, Wout Bittremieux wrote: >> Dear colleagues, >> >> This is a reminder that our next teleconference is scheduled for >> Wednesday, July 15, at 14h00 GMT (15h00 London, 16h00 Western >> Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). >> >> You can connect to our teleconference on Zoom through the >> following link: >> https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 >> (Password: 012575) >> >> I'd like propose the following agenda items: >> >> - Update on finalization of specification document >> (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit). >> >> - New CV requests for PTXQC via mailing list >> (https://sourceforge.net/p/psidev/mailman/message/37059772/). @Chris: >> Is this not covered yet? >> - Continue discussion on CV references / PURLs in mzQC schema >> (https://github.com/HUPO-PSI/mzQC/pull/103). >> >> Thanks, >> Wout > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Bielow, C. <Chr...@fu...> - 2020-07-15 06:01:15
|
Dear all, I'm still on vacation and will continue working next week. Wout's suggestion sounds great (as it gets rid of Purls). The Cv request Mail is a bit surprising for me as well. You can ignore that for now. Thanks and see you in 2 weeks?! Cheers Chris ------ Originalnachricht------ Von: Wout Bittremieux via Psidev-qc-dev Datum: Mi., 15. Juli 2020 05:06 An: psi...@li...; Cc: Betreff:[Psidev-qc-dev] Upcoming teleconference 15/07 Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, July 15, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) I'd like propose the following agenda items: - Update on finalization of specification document (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit). - New CV requests for PTXQC via mailing list (https://sourceforge.net/p/psidev/mailman/message/37059772/). @Chris: Is this not covered yet? - Continue discussion on CV references / PURLs in mzQC schema (https://github.com/HUPO-PSI/mzQC/pull/103). Thanks, Wout _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
|
From: Wout B. <wbi...@he...> - 2020-07-15 02:27:02
|
Unfortunately I won't be able to join the call because I'm co-chairing the CompMS session at ISMB the whole day. (*Maybe* I'll be able to join the first 10 minutes.) Final preparations for this have taken up quite some time in the past two weeks as well, so unfortunately I haven't yet had the time to contribute further to the specification document. I've been thinking about using PURLs or CV references to link quality metrics to CVs, and I'm starting to favor something that was suggested two weeks ago: to stick to the old format, but reserve CV namespaces for the most commonly used CVs. So that would be "QC" for our CV, "MS" for the MS CV, and "UO" for the unit ontology. These cover the majority of use cases I think, and if we identify other commonly used CVs we can still add those as well. The advantage of this is that it's possible to efficiently query terms in these CVs, because the CV keys are fixed. So they essentially function the same way as the PURLS, without the need of actually having to use PURLs. For other CVs that aren't reserved a two-query solution will still be needed, but considering that such queries should be rare I don't consider that too much of a problem. A further advantage is that we can avoid the somewhat clunky PURL specification, don't depend on an external service, and (very importantly imo!) don't require web lookups to the PURL service (i.e. essential for doing stuff in firewalled compute environments). A small disadvantage would be that to validate these reserved CV keys we'd need to add explicit functionality in the mzQC Python library to do so. But this is hardly a showstopper. This solution seems to somewhat give us the best of both worlds I think. It's also nice that we don't need to change the JSON schema. (Although we should probably still change the CV references in the JSON schema from a dictionary to a list.) The only thing would be to clearly document this behavior and the reserved CV keys in the specification document. I think we should also adapt and explicitly document some best practices that were discussed in function of adapting PURLs: that CV terms are final and can only ever be deprecated (i.e. an accession will always point to the same CV term) and that we should document an official CV versioning scheme. Let me know if I've overlooked something here. Best, Wout On 14/07/2020 19:05, Wout Bittremieux wrote: > Dear colleagues, > > This is a reminder that our next teleconference is scheduled for > Wednesday, July 15, at 14h00 GMT (15h00 London, 16h00 Western > Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). > > You can connect to our teleconference on Zoom through the > following link: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > (Password: 012575) > > I'd like propose the following agenda items: > > - Update on finalization of specification document > (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit). > > - New CV requests for PTXQC via mailing list > (https://sourceforge.net/p/psidev/mailman/message/37059772/). @Chris: Is > this not covered yet? > - Continue discussion on CV references / PURLs in mzQC schema > (https://github.com/HUPO-PSI/mzQC/pull/103). > > Thanks, > Wout |
|
From: Wout B. <wbi...@he...> - 2020-07-15 02:05:56
|
Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, July 15, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) I'd like propose the following agenda items: - Update on finalization of specification document (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit). - New CV requests for PTXQC via mailing list (https://sourceforge.net/p/psidev/mailman/message/37059772/). @Chris: Is this not covered yet? - Continue discussion on CV references / PURLs in mzQC schema (https://github.com/HUPO-PSI/mzQC/pull/103). Thanks, Wout |
|
From: christina xu <xuc...@gm...> - 2020-07-12 18:58:06
|
Dear Sir/Madam Good evening. Hope this email finds you well. I've been working on A project about PTXQC recently. So let me find some new metrics there. I have put the information in the attachment. Please check it. I'm looking forward to hearing from you. Sincerely Chen Xu |
|
From: Wout B. <wbi...@he...> - 2020-07-01 00:29:36
|
Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, July 1, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) I'd like propose the following agenda items: - Address comments in specification document (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit) - CV references / PURLs in mzQC schema (https://github.com/HUPO-PSI/mzQC/pull/103) Thanks, Wout |
|
From: Wout B. <wbi...@he...> - 2020-06-18 00:51:42
|
Dear colleagues, You can find the notes for today's meeting here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20200617_telco.md Note that our next meeting will be in two weeks, on *July 1*. Best, Wout On 16/06/2020 17:09, Wout Bittremieux via Psidev-qc-dev wrote: > Dear colleagues, > > This is a reminder that our next teleconference is scheduled for > Wednesday, June 17, at 14h00 GMT (15h00 London, 16h00 Western > Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). > > You can connect to our teleconference on Zoom through the > following link: > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fj%2F92419363577%3Fpwd%3DWVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C3fe05c2ae9e644f12fd408d81252d645%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637279495198678485&sdata=7%2BySvC%2BvYtTFtEjSdv1PbPfK43vY%2Bwa5DT7z0XeXA5g%3D&reserved=0 > > (Password: 012575) > > I'd like propose the following agenda items: > > - Please review PR 103 > (https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FHUPO-PSI%2FmzQC%2Fpull%2F103&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C3fe05c2ae9e644f12fd408d81252d645%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637279495198678485&sdata=PAc8TR78lwx6Ph2Y%2BsrhgGAuly7dcjIJbU6sCAbNmvs%3D&reserved=0): > JSON schema update to use a PURL reference to metrics in a CV > > - Last month's agenda items raised by Mathias: > - Decisions to take: > - accept or revise the unit description in the specification document > - include metabolomics in core doc or defer to pending issues > - integration of the companion documents (intro+link in the appendix) > - setQuality referencing description > - order of document sections > - Information to add: > - integration of the qccv recommendations on GitHub > - software lists (same issue as above, how do we link out to a > stable url of a maintained list of software/recommendations for > cv/examples/etc) > - use-case description paragraph for metabolomics and > 'core-facilities'/large centres (closely related to the last point below) > > Thanks, > Wout > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fpsidev-qc-dev&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C3fe05c2ae9e644f12fd408d81252d645%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637279495198678485&sdata=DOX1Dl%2FK3E7OxhieAvex5BXH1RF%2FVebzrF96uhvEX2A%3D&reserved=0 > |
|
From: Tabb, D. P. [<dt...@su...> - 2020-06-17 07:45:47
|
Hi, all. I will be teaching my ASMS short course this afternoon and thus will not be able to join you during the call. I will look to the minutes to see which action items I have been assigned! Thanks, Dave -----Original Message----- From: Wout Bittremieux via Psidev-qc-dev <psi...@li...> Sent: Wednesday, June 17, 2020 2:10 AM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference 17/06 CAUTION: This email originated from outside of the University. Do not click links or open attachments unless you recognize the sender and know the content is safe. Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, June 17, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Zoom through the following link: https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fj%2F92419363577%3Fpwd%3DWVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09&data=02%7C01%7C%7C6de42db1c17040e390b508d81252d0fa%7Ca6fa3b030a3c42588433a120dffcd348%7C0%7C0%7C637279494245248475&sdata=G8l2ghbHhTcSE%2BeVcn%2B%2BTinpgi4OJqsmzOKTqb%2BJHBw%3D&reserved=0 (Password: 012575) I'd like propose the following agenda items: - Please review PR 103 (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FHUPO-PSI%2FmzQC%2Fpull%2F103&data=02%7C01%7C%7C6de42db1c17040e390b508d81252d0fa%7Ca6fa3b030a3c42588433a120dffcd348%7C0%7C0%7C637279494245248475&sdata=ehySFBBqfySqiiV87fEZCtbs4Jck7HJd5nhvA7fSIec%3D&reserved=0): JSON schema update to use a PURL reference to metrics in a CV - Last month's agenda items raised by Mathias: - Decisions to take: - accept or revise the unit description in the specification document - include metabolomics in core doc or defer to pending issues - integration of the companion documents (intro+link in the appendix) - setQuality referencing description - order of document sections - Information to add: - integration of the qccv recommendations on GitHub - software lists (same issue as above, how do we link out to a stable url of a maintained list of software/recommendations for cv/examples/etc) - use-case description paragraph for metabolomics and 'core-facilities'/large centres (closely related to the last point below) Thanks, Wout _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fpsidev-qc-dev&data=02%7C01%7C%7C6de42db1c17040e390b508d81252d0fa%7Ca6fa3b030a3c42588433a120dffcd348%7C0%7C0%7C637279494245248475&sdata=kumJVkhgSY6lMTS%2FTysN%2BUZrErDYRtgR64qFdOugB5s%3D&reserved=0 [https://cdn.sun.ac.za/100/ProductionFooter.jpg]<https://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<https://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bereël. Vrywaringsklousule<https://www.sun.ac.za/emaildisclaimer> |
|
From: Wout B. <wbi...@he...> - 2020-06-17 00:10:07
|
Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, June 17, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) I'd like propose the following agenda items: - Please review PR 103 (https://github.com/HUPO-PSI/mzQC/pull/103): JSON schema update to use a PURL reference to metrics in a CV - Last month's agenda items raised by Mathias: - Decisions to take: - accept or revise the unit description in the specification document - include metabolomics in core doc or defer to pending issues - integration of the companion documents (intro+link in the appendix) - setQuality referencing description - order of document sections - Information to add: - integration of the qccv recommendations on GitHub - software lists (same issue as above, how do we link out to a stable url of a maintained list of software/recommendations for cv/examples/etc) - use-case description paragraph for metabolomics and 'core-facilities'/large centres (closely related to the last point below) Thanks, Wout |
|
From: Wout B. <wbi...@he...> - 2020-05-21 01:09:55
|
Dear colleagues, You can find the meeting notes of today's teleconference here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20200520_telco.md Additionally, please have a look at the discussion items Mathias has raised in the previous email. If possible try to address/think about some of these in the next few weeks so that we can discuss them next month. Thanks, Wout On 20/05/2020 04:28, Walzer wrote: > Dear all, > > in reference to my earlier mail, I'd like to propose some more details > to the agenda Wout has already laid out for us: > > Decisions to take: > * accept or revise the unit description in the specification document > > * include metabolomics in core doc or defer to pending issues > > * integration of the companion documents (intro+link in the appendix) > > * setQuality referencing description > > * order of document sections > > Information to add: > > * integration of the qccv recommendations on GitHub > > * software lists (same issue as above, how do we link out to a stable > url of a maintained list of software/recommendations for cv/examples/etc) > > * use-case description paragraph for metabolomics and > 'core-facilities'/large centres (closely related to the last point > below) > > Cases to discuss: > > * Efficient querying of metrics across multiple files. This is > important functionality that apparently isn't conveniently supported at > the moment. Please check the discussion in issue 99: > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FHUPO-PSI%2FmzQC%2Fissues%2F99&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=RXbYSkVYWxex963Jq2Edv%2FUMQwv%2BHiv2uRzt9uWh3Sk%3D&reserved=0 > > > best, > > mths > > On 19/05/2020 17:26, Wout Bittremieux via Psidev-qc-dev wrote: >> Dear colleagues, >> >> This is a reminder that our next teleconference is scheduled for >> Wednesday, May 20, at 14h00 GMT (15h00 London, 16h00 Western >> Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). >> >> As there were some issues with Google Hangouts last month, I've >> created a Zoom link to connect to our teleconference: >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fj%2F92419363577%3Fpwd%3DWVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=PU6evkE5I1KAq2mtfsaOzZzusq%2FyWNCjEW2T56iuouA%3D&reserved=0 >> >> (Password: 012575) >> >> I'd like propose the following agenda items: >> >> - Efficient querying of metrics across multiple files. This is >> important functionality that apparently isn't conveniently supported >> at the moment. Please check the discussion in issue 99: >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FHUPO-PSI%2FmzQC%2Fissues%2F99&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=RXbYSkVYWxex963Jq2Edv%2FUMQwv%2BHiv2uRzt9uWh3Sk%3D&reserved=0 >> >> - Specification document: status and task distribution to get this >> finalized for submission to the document process. >> - Action point from last month: Think about tasks that have to be >> completed for the 1.0 release and add them to the project view on GitHub. >> >> Thanks, >> Wout >> >> --- >> >> Hello, Wout Bittremieux has invited you to a UCHealth Zoom meeting. >> >> >> Topic: HUPO-PSI QC working group >> Time: May 20, 2020 14:00 Greenwich Mean Time >> Every month on the Third Wed, until Dec 16, 2020, 8 occurrence(s) >> May 20, 2020 14:00 >> Jun 17, 2020 14:00 >> Jul 15, 2020 14:00 >> Aug 19, 2020 14:00 >> Sep 16, 2020 14:00 >> Oct 21, 2020 14:00 >> Nov 18, 2020 14:00 >> Dec 16, 2020 14:00 >> Please download and import the following iCalendar (.ics) files to >> your calendar system. >> Monthly: >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fmeeting%2FtJYpduCrqDgvHdMQ6vBK_uoLqYkTdZV4-I1F%2Fics%3FicsToken%3D98tyKuCqqjojGdKWtR6ARowQBoj4XenwpnZYgqdwrUnzIQtsdwzaJ9tJBrZFJoyd&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=KdGUY5rQjA6mv%2FRj1S3llB1vaeeeHsgutvLybdHeEV4%3D&reserved=0 >> >> >> Join from PC, Mac, Linux, iOS or Android: >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fj%2F92419363577%3Fpwd%3DWVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=PU6evkE5I1KAq2mtfsaOzZzusq%2FyWNCjEW2T56iuouA%3D&reserved=0 >> >> Password: 012575 >> >> Or iPhone one-tap : >> US: +16699006833,,92419363577# or +13462487799,,92419363577# >> Or Telephone: >> Dial(for higher quality, dial a number based on your current >> location): >> US: +1 669 900 6833 or +1 346 248 7799 or +1 253 215 8782 or >> +1 312 626 6799 or +1 646 876 9923 or +1 301 715 8592 >> Meeting ID: 924 1936 3577 >> International numbers available: >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuchealth.zoom.us%2Fu%2FaOD4jDarM&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=%2Bi4zQZqBotx5NV47Dqdm6kXtwqYgqx5XgkTrGJJjbYI%3D&reserved=0 >> >> >> **Schedulers do not remove from invite:** >> >> MUTE/UNMUTE - PC: Alt + A MAC: Shift + Command + A Telephone: *6 >> >> If using Zoom from UC Health Conference Room - Some rooms are equipped >> with a Conference phone and an integrated computer microphone for >> convenience. You will experience audio feedback if both are used to >> connect a Zoom meeting. Use the integrated computer microphone to >> conduct Zoom meetings **ONLY**. >> >> Or an H.323/SIP room system: >> H.323: >> 162.255.37.11 (US West) >> 162.255.36.11 (US East) >> 115.114.131.7 (India Mumbai) >> 115.114.115.7 (India Hyderabad) >> 213.19.144.110 (EMEA) >> 103.122.166.55 (Australia) >> 209.9.211.110 (Hong Kong SAR) >> 64.211.144.160 (Brazil) >> 69.174.57.160 (Canada) >> 207.226.132.110 (Japan) >> Meeting ID: 924 1936 3577 >> Password: 012575 >> >> SIP: 924...@zo... >> Password: 012575 >> >> >> >> _______________________________________________ >> Psidev-qc-dev mailing list >> Psi...@li... >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fpsidev-qc-dev&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7C8bfcf20c316042b44d6f08d7fcb0f912%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637255710118787187&sdata=FZw%2BJQmskmhpKGZfZTCdhjJBz2h9hMDXw7hr7WCrZk8%3D&reserved=0 >> > |
|
From: Walzer <wa...@eb...> - 2020-05-20 15:27:15
|
Dear all, please find attached Peter Crowther's slides on the issue of querying from mzQC files and proposed solution (JSONpath, see also https://github.com/HUPO-PSI/mzQC/issues/99). Thank you Peter for the in-depth explanation of the issue! I think it is an important one. best, -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Walzer <wa...@eb...> - 2020-05-20 11:28:38
|
Dear all, in reference to my earlier mail, I'd like to propose some more details to the agenda Wout has already laid out for us: Decisions to take: * accept or revise the unit description in the specification document * include metabolomics in core doc or defer to pending issues * integration of the companion documents (intro+link in the appendix) * setQuality referencing description * order of document sections Information to add: * integration of the qccv recommendations on GitHub * software lists (same issue as above, how do we link out to a stable url of a maintained list of software/recommendations for cv/examples/etc) * use-case description paragraph for metabolomics and 'core-facilities'/large centres (closely related to the last point below) Cases to discuss: * Efficient querying of metrics across multiple files. This is important functionality that apparently isn't conveniently supported at the moment. Please check the discussion in issue 99: https://github.com/HUPO-PSI/mzQC/issues/99 best, mths On 19/05/2020 17:26, Wout Bittremieux via Psidev-qc-dev wrote: > Dear colleagues, > > This is a reminder that our next teleconference is scheduled for > Wednesday, May 20, at 14h00 GMT (15h00 London, 16h00 Western > Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). > > As there were some issues with Google Hangouts last month, I've > created a Zoom link to connect to our teleconference: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > (Password: 012575) > > I'd like propose the following agenda items: > > - Efficient querying of metrics across multiple files. This is > important functionality that apparently isn't conveniently supported > at the moment. Please check the discussion in issue 99: > https://github.com/HUPO-PSI/mzQC/issues/99 > - Specification document: status and task distribution to get this > finalized for submission to the document process. > - Action point from last month: Think about tasks that have to be > completed for the 1.0 release and add them to the project view on GitHub. > > Thanks, > Wout > > --- > > Hello, Wout Bittremieux has invited you to a UCHealth Zoom meeting. > > > Topic: HUPO-PSI QC working group > Time: May 20, 2020 14:00 Greenwich Mean Time > Every month on the Third Wed, until Dec 16, 2020, 8 occurrence(s) > May 20, 2020 14:00 > Jun 17, 2020 14:00 > Jul 15, 2020 14:00 > Aug 19, 2020 14:00 > Sep 16, 2020 14:00 > Oct 21, 2020 14:00 > Nov 18, 2020 14:00 > Dec 16, 2020 14:00 > Please download and import the following iCalendar (.ics) files to > your calendar system. > Monthly: > https://uchealth.zoom.us/meeting/tJYpduCrqDgvHdMQ6vBK_uoLqYkTdZV4-I1F/ics?icsToken=98tyKuCqqjojGdKWtR6ARowQBoj4XenwpnZYgqdwrUnzIQtsdwzaJ9tJBrZFJoyd > > Join from PC, Mac, Linux, iOS or Android: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > Password: 012575 > > Or iPhone one-tap : > US: +16699006833,,92419363577# or +13462487799,,92419363577# > Or Telephone: > Dial(for higher quality, dial a number based on your current > location): > US: +1 669 900 6833 or +1 346 248 7799 or +1 253 215 8782 > or +1 312 626 6799 or +1 646 876 9923 or +1 301 715 8592 > Meeting ID: 924 1936 3577 > International numbers available: https://uchealth.zoom.us/u/aOD4jDarM > > **Schedulers do not remove from invite:** > > MUTE/UNMUTE - PC: Alt + A MAC: Shift + Command + A Telephone: *6 > > If using Zoom from UC Health Conference Room - Some rooms are equipped > with a Conference phone and an integrated computer microphone for > convenience. You will experience audio feedback if both are used to > connect a Zoom meeting. Use the integrated computer microphone to > conduct Zoom meetings **ONLY**. > > Or an H.323/SIP room system: > H.323: > 162.255.37.11 (US West) > 162.255.36.11 (US East) > 115.114.131.7 (India Mumbai) > 115.114.115.7 (India Hyderabad) > 213.19.144.110 (EMEA) > 103.122.166.55 (Australia) > 209.9.211.110 (Hong Kong SAR) > 64.211.144.160 (Brazil) > 69.174.57.160 (Canada) > 207.226.132.110 (Japan) > Meeting ID: 924 1936 3577 > Password: 012575 > > SIP: 924...@zo... > Password: 012575 > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Walzer <wa...@eb...> - 2020-05-20 11:01:03
|
Dear all, I am happy to tell you that we made visible progress towards getting our mzQC specification document 'shipshape'. (Just for completeness sake here is the link to the google doc: https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M ) There are a few items left open, and I am positive that we can resolve those _very_ soon! * unit description and integration of the qccv recommendations on GitHub * software lists (and probably more examples but we can add them as they come) * use-case description paragraph for metabolomics and 'core-facilities'/large centres * integration of the companion documents (intro+link in the appendix) * setQuality referencing description As already said, I am in good hope that we can iron these issues out during the call and the following (few) days. After that, whats left is keeping an eye on consistency, proper wording, and presentation. I hope you are as excited about that as I am, speak soon, mths -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Wout B. <wbi...@he...> - 2020-05-19 16:26:35
|
Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, May 20, at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). As there were some issues with Google Hangouts last month, I've created a Zoom link to connect to our teleconference: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) I'd like propose the following agenda items: - Efficient querying of metrics across multiple files. This is important functionality that apparently isn't conveniently supported at the moment. Please check the discussion in issue 99: https://github.com/HUPO-PSI/mzQC/issues/99 - Specification document: status and task distribution to get this finalized for submission to the document process. - Action point from last month: Think about tasks that have to be completed for the 1.0 release and add them to the project view on GitHub. Thanks, Wout --- Hello, Wout Bittremieux has invited you to a UCHealth Zoom meeting. Topic: HUPO-PSI QC working group Time: May 20, 2020 14:00 Greenwich Mean Time Every month on the Third Wed, until Dec 16, 2020, 8 occurrence(s) May 20, 2020 14:00 Jun 17, 2020 14:00 Jul 15, 2020 14:00 Aug 19, 2020 14:00 Sep 16, 2020 14:00 Oct 21, 2020 14:00 Nov 18, 2020 14:00 Dec 16, 2020 14:00 Please download and import the following iCalendar (.ics) files to your calendar system. Monthly: https://uchealth.zoom.us/meeting/tJYpduCrqDgvHdMQ6vBK_uoLqYkTdZV4-I1F/ics?icsToken=98tyKuCqqjojGdKWtR6ARowQBoj4XenwpnZYgqdwrUnzIQtsdwzaJ9tJBrZFJoyd Join from PC, Mac, Linux, iOS or Android: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 Password: 012575 Or iPhone one-tap : US: +16699006833,,92419363577# or +13462487799,,92419363577# Or Telephone: Dial(for higher quality, dial a number based on your current location): US: +1 669 900 6833 or +1 346 248 7799 or +1 253 215 8782 or +1 312 626 6799 or +1 646 876 9923 or +1 301 715 8592 Meeting ID: 924 1936 3577 International numbers available: https://uchealth.zoom.us/u/aOD4jDarM **Schedulers do not remove from invite:** MUTE/UNMUTE - PC: Alt + A MAC: Shift + Command + A Telephone: *6 If using Zoom from UC Health Conference Room - Some rooms are equipped with a Conference phone and an integrated computer microphone for convenience. You will experience audio feedback if both are used to connect a Zoom meeting. Use the integrated computer microphone to conduct Zoom meetings **ONLY**. Or an H.323/SIP room system: H.323: 162.255.37.11 (US West) 162.255.36.11 (US East) 115.114.131.7 (India Mumbai) 115.114.115.7 (India Hyderabad) 213.19.144.110 (EMEA) 103.122.166.55 (Australia) 209.9.211.110 (Hong Kong SAR) 64.211.144.160 (Brazil) 69.174.57.160 (Canada) 207.226.132.110 (Japan) Meeting ID: 924 1936 3577 Password: 012575 SIP: 924...@zo... Password: 012575 |
|
From: Wout B. <wbi...@he...> - 2020-04-16 01:14:54
|
Dear colleagues, You can find the minutes for our teleconference from this morning here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/20200415_telco.md I want to briefly highlight the action points we have identified: - Mathias: Assign tasks to finalize the specification document. - Everyone: Think about tasks that have to be completed for the 1.0 release and add them to the project view on GitHub. Also note that Julian will be on parental leave for a month starting next week. Best, Wout On 14/04/2020 17:53, Wout Bittremieux via Psidev-qc-dev wrote: > Dear colleagues, > > Apologies for the late reminder, but our next teleconference is > scheduled for Wednesday, April 15th (tomorrow!), at 14h00 GMT (15h00 > London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San > Diego). > > You can connect to our teleconference on Google Hangouts through the > following link: > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fhangouts.google.com%2Fgroup%2FoxJRLtB5c4YhTtdx6&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Caf4aa3f24808478f670b08d7e0d78d76%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637225088732861329&sdata=lEjbJ3yJDiuoZ1hOv4l%2BcW0RF5eYtr7hJOSsiR6VyJk%3D&reserved=0 > > > I'd like propose the following agenda items to follow up on last month's > meeting: > > - I hope that Julian will be able to join us to discuss the CV, as there > were less opportunities to do so last month. > - Take another look at the status of the accompanying documents. Set > actions points and divide tasks to finalize these efforts. > - If Paul can join us, he can update us on the status of the manuscript > he volunteered to draft. > > Thanks, > Wout > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fpsidev-qc-dev&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Caf4aa3f24808478f670b08d7e0d78d76%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637225088732861329&sdata=lIS9FlLjppG7mU8YvxfQka6trInNrUrlhJldrg8GnRI%3D&reserved=0 > |
|
From: David T. <dta...@gm...> - 2020-04-15 14:10:27
|
Join Zoom Meeting https://maties.zoom.us/j/93972053382?pwd=bGp3WVlsR0pSQ2FGNXVqcEhDdHNQdz09 Meeting ID: 939 7205 3382 Password: 833780 One tap mobile +12532158782,,93972053382# US +13017158592,,93972053382# US Dial by your location +1 253 215 8782 US +1 301 715 8592 US +1 312 626 6799 US (Chicago) +1 346 248 7799 US (Houston) +1 669 900 6833 US (San Jose) +1 929 205 6099 US (New York) Meeting ID: 939 7205 3382 Find your local number: https://maties.zoom.us/u/abZa6I6niX Join by Skype for Business https://maties.zoom.us/skype/93972053382 |
|
From: Wout B. <wbi...@he...> - 2020-04-15 00:54:10
|
Dear colleagues, Apologies for the late reminder, but our next teleconference is scheduled for Wednesday, April 15th (tomorrow!), at 14h00 GMT (15h00 London, 16h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/oxJRLtB5c4YhTtdx6 I'd like propose the following agenda items to follow up on last month's meeting: - I hope that Julian will be able to join us to discuss the CV, as there were less opportunities to do so last month. - Take another look at the status of the accompanying documents. Set actions points and divide tasks to finalize these efforts. - If Paul can join us, he can update us on the status of the manuscript he volunteered to draft. Thanks, Wout |
|
From: Tabb, D. P. [<dt...@su...> - 2020-03-24 13:23:12
|
Hi, all. Natasha was in a (minor?) car accident, so I am likely to be absent or distracted during this next session. Thanks, DT Get Outlook for Android<https://aka.ms/ghei36> [https://cdn.sun.ac.za/100/ProductionFooter.jpg]<https://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<https://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<https://www.sun.ac.za/emaildisclaimer> |
|
From: Julian U. <jul...@ru...> - 2020-03-20 09:54:38
|
Hej mzQC-group, I definitely cannot make it to all slots, but will try to attend to some at least. With home office and kids at home at the same time, the family needs some time as well. See you next week, Julian On 19.03.20 21:26, Walzer wrote: > Hi again, > > sorry, my mail software was convinced it would better reformat my mail > before sending it w/o asking me first. (I am usually in full support for > txt-only mail, there however, I wasn't.) > > Please find a link to the detailed schedule here: > https://docs.google.com/spreadsheets/u/1/d/e/2PACX-1vRIppq0NaEN1nM73LCU8aCee2O9GeLolrHFMctQRVUIS_QFXZutk6GkeIuTn_KjSZpLVzziMNocbY_Y/pubhtml?gid=0&single=true > > > The agenda points referenced there plese find here: > https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/PSI2020-QC_Agenda.md > > > You can also find the former message, formatted prettier, in our slack > channel track 3! Please log-on soon in any case to take part in the poll. > > best, > > mths > > On 19/03/2020 20:00, Walzer wrote: >> Hi there, mzQC enthusiasts! >> >> For the structure of our upcoming all-virtual PSI2020 conference QC >> track, we have for each of the 3 (.5) days an early slot of 3h starting >> >> PDT GMT CET SAST >> 8:00 15:00 16:00 17:00 >> >> and a late slot of 3h starting. >> >> PDT GMT CET SAST >> 12:00 19:00 20:00 21:00 >> >> The first day's first slot is cut-short half an hour for the >> introductory plenary session. >> >> On our putative agenda >> (https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/PSI2020-QC_Agenda.md), >> we have some items which are dependent on others, and others that can >> be tackled in parallel. From the proposed agenda linked above I tried >> to pry apart those items and assemble them into series of events as >> following. (Same as main agenda, but some more details.) >> >> Day PDT GMT CET SAST >> Agenda main items Break-out subitems >> >> 8:30 15:30 16:30 17:30 Overview first 5-10 1 >> >> >> Mon 9:00 16:00 17:00 18:00 Break-out >> 1 2,3 - >> >> 10:00 17:00 18:00 18:00 Wrap last 10 1 >> >> >> >> >> >> >> >> >> >> >> >> >> >> 12:00 19:00 20:00 21:00 Overview first 5-10 1 >> >> >> Mon 13:00 20:00 21:00 22:00 Break-out >> 4 5 - >> >> 14:00 21:00 22:00 23:00 Wrap last 10 1 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 8:00 15:00 17:00 18:00 Overview first 5-10 2 >> >> >> Tue 9:00 16:00 18:00 19:00 Break-out >> a b c >> >> 10:00 17:00 19:00 20:00 Wrap last 10 2 >> >> >> >> >> >> >> >> >> >> >> >> >> >> 12:00 19:00 20:00 21:00 Overview first 5-10 3 >> >> >> Tue 13:00 20:00 21:00 22:00 Break-out >> a b c >> >> 14:00 21:00 22:00 23:00 Wrap last 10 3 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 8:00 15:00 17:00 18:00 Overview first 5-10 3 >> >> >> Wed 9:00 16:00 18:00 19:00 Break-out >> a b c >> >> 10:00 17:00 19:00 20:00 Wrap last 10 3 >> >> >> >> >> >> >> >> >> >> >> >> >> >> 12:00 19:00 20:00 21:00 Overview first 5-10 3 >> >> >> Wed 13:00 20:00 21:00 22:00 Break-out >> a b >> c >> >> 14:00 21:00 22:00 23:00 Wrap last 10 3 >> >> >> >> As a general way of things, I think it would be best, if we'd meet up >> at the beginning of each session all together for a flexible 5-10 >> minutes. There, overview the upcoming tasks and then break-out early, >> to regroup for the last 10 minutes for a wrap-up. Our slack channel >> will have the current links to the break-out places (either directly >> as a slack thread or preferably meets/hangouts link). >> >> Since it is a *purely virtual conference* (allows for more flexible >> schedules in the best case) and we might have quite different timezone >> constellations in the break-outs as in the general group, I thought it >> a good idea to assemble a poll who in which timezone would like to >> participate in which break-out group. *Please log-on to our slack >> workspace and fill the poll until Saturday latest. Multiple choice, if >> several time directions befit you, please select them.* I will then >> try to suggest custom break-outs. In cases where the poll should >> reveal this as not-so-ideal, we have the above suggested schedule as >> fallback option. First day should be aligned the overall schedule (see >> slack lobby pinned item) with in any case. I will keep an up-to-date >> schedule in our slack channel. >> >> If you think there are items missing in the agenda, please let me know >> by the end of Friday, and I'll try to fit them into the schedule and >> the poll. >> >> take care, >> >> mths >> |
|
From: Walzer <wa...@eb...> - 2020-03-19 20:26:50
|
Hi again, sorry, my mail software was convinced it would better reformat my mail before sending it w/o asking me first. (I am usually in full support for txt-only mail, there however, I wasn't.) Please find a link to the detailed schedule here: https://docs.google.com/spreadsheets/u/1/d/e/2PACX-1vRIppq0NaEN1nM73LCU8aCee2O9GeLolrHFMctQRVUIS_QFXZutk6GkeIuTn_KjSZpLVzziMNocbY_Y/pubhtml?gid=0&single=true The agenda points referenced there plese find here: https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/PSI2020-QC_Agenda.md You can also find the former message, formatted prettier, in our slack channel track 3! Please log-on soon in any case to take part in the poll. best, mths On 19/03/2020 20:00, Walzer wrote: > Hi there, mzQC enthusiasts! > > For the structure of our upcoming all-virtual PSI2020 conference QC > track, we have for each of the 3 (.5) days an early slot of 3h starting > > PDT GMT CET SAST > 8:00 15:00 16:00 17:00 > > and a late slot of 3h starting. > > PDT GMT CET SAST > 12:00 19:00 20:00 21:00 > > The first day's first slot is cut-short half an hour for the > introductory plenary session. > > On our putative agenda > (https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/PSI2020-QC_Agenda.md), > we have some items which are dependent on others, and others that can > be tackled in parallel. From the proposed agenda linked above I tried > to pry apart those items and assemble them into series of events as > following. (Same as main agenda, but some more details.) > > Day PDT GMT CET SAST > Agenda main items Break-out subitems > > 8:30 15:30 16:30 17:30 Overview first 5-10 1 > > > Mon 9:00 16:00 17:00 18:00 Break-out > 1 2,3 - > > 10:00 17:00 18:00 18:00 Wrap last 10 1 > > > > > > > > > > > > > > 12:00 19:00 20:00 21:00 Overview first 5-10 1 > > > Mon 13:00 20:00 21:00 22:00 Break-out > 4 5 - > > 14:00 21:00 22:00 23:00 Wrap last 10 1 > > > > > > > > > > > > > > > > > > > > > > > > 8:00 15:00 17:00 18:00 Overview first 5-10 2 > > > Tue 9:00 16:00 18:00 19:00 Break-out > a b c > > 10:00 17:00 19:00 20:00 Wrap last 10 2 > > > > > > > > > > > > > > 12:00 19:00 20:00 21:00 Overview first 5-10 3 > > > Tue 13:00 20:00 21:00 22:00 Break-out > a b c > > 14:00 21:00 22:00 23:00 Wrap last 10 3 > > > > > > > > > > > > > > > > > > > > > > > > 8:00 15:00 17:00 18:00 Overview first 5-10 3 > > > Wed 9:00 16:00 18:00 19:00 Break-out > a b c > > 10:00 17:00 19:00 20:00 Wrap last 10 3 > > > > > > > > > > > > > > 12:00 19:00 20:00 21:00 Overview first 5-10 3 > > > Wed 13:00 20:00 21:00 22:00 Break-out > a b > c > > 14:00 21:00 22:00 23:00 Wrap last 10 3 > > > > As a general way of things, I think it would be best, if we'd meet up > at the beginning of each session all together for a flexible 5-10 > minutes. There, overview the upcoming tasks and then break-out early, > to regroup for the last 10 minutes for a wrap-up. Our slack channel > will have the current links to the break-out places (either directly > as a slack thread or preferably meets/hangouts link). > > Since it is a *purely virtual conference* (allows for more flexible > schedules in the best case) and we might have quite different timezone > constellations in the break-outs as in the general group, I thought it > a good idea to assemble a poll who in which timezone would like to > participate in which break-out group. *Please log-on to our slack > workspace and fill the poll until Saturday latest. Multiple choice, if > several time directions befit you, please select them.* I will then > try to suggest custom break-outs. In cases where the poll should > reveal this as not-so-ideal, we have the above suggested schedule as > fallback option. First day should be aligned the overall schedule (see > slack lobby pinned item) with in any case. I will keep an up-to-date > schedule in our slack channel. > > If you think there are items missing in the agenda, please let me know > by the end of Friday, and I'll try to fit them into the schedule and > the poll. > > take care, > > mths > -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Walzer <wa...@eb...> - 2020-03-19 20:01:11
|
Hi there, mzQC enthusiasts! For the structure of our upcoming all-virtual PSI2020 conference QC track, we have for each of the 3 (.5) days an early slot of 3h starting PDT GMT CET SAST 8:00 15:00 16:00 17:00 and a late slot of 3h starting. PDT GMT CET SAST 12:00 19:00 20:00 21:00 The first day's first slot is cut-short half an hour for the introductory plenary session. On our putative agenda (https://github.com/HUPO-PSI/mzQC/blob/master/meeting_notes/PSI2020-QC_Agenda.md), we have some items which are dependent on others, and others that can be tackled in parallel. From the proposed agenda linked above I tried to pry apart those items and assemble them into series of events as following. (Same as main agenda, but some more details.) Day PDT GMT CET SAST Agenda main items Break-out subitems 8:30 15:30 16:30 17:30 Overview first 5-10 1 Mon 9:00 16:00 17:00 18:00 Break-out 1 2,3 - 10:00 17:00 18:00 18:00 Wrap last 10 1 12:00 19:00 20:00 21:00 Overview first 5-10 1 Mon 13:00 20:00 21:00 22:00 Break-out 4 5 - 14:00 21:00 22:00 23:00 Wrap last 10 1 8:00 15:00 17:00 18:00 Overview first 5-10 2 Tue 9:00 16:00 18:00 19:00 Break-out a b c 10:00 17:00 19:00 20:00 Wrap last 10 2 12:00 19:00 20:00 21:00 Overview first 5-10 3 Tue 13:00 20:00 21:00 22:00 Break-out a b c 14:00 21:00 22:00 23:00 Wrap last 10 3 8:00 15:00 17:00 18:00 Overview first 5-10 3 Wed 9:00 16:00 18:00 19:00 Break-out a b c 10:00 17:00 19:00 20:00 Wrap last 10 3 12:00 19:00 20:00 21:00 Overview first 5-10 3 Wed 13:00 20:00 21:00 22:00 Break-out a b c 14:00 21:00 22:00 23:00 Wrap last 10 3 As a general way of things, I think it would be best, if we'd meet up at the beginning of each session all together for a flexible 5-10 minutes. There, overview the upcoming tasks and then break-out early, to regroup for the last 10 minutes for a wrap-up. Our slack channel will have the current links to the break-out places (either directly as a slack thread or preferably meets/hangouts link). Since it is a *purely virtual conference* (allows for more flexible schedules in the best case) and we might have quite different timezone constellations in the break-outs as in the general group, I thought it a good idea to assemble a poll who in which timezone would like to participate in which break-out group. *Please log-on to our slack workspace and fill the poll until Saturday latest. Multiple choice, if several time directions befit you, please select them.* I will then try to suggest custom break-outs. In cases where the poll should reveal this as not-so-ideal, we have the above suggested schedule as fallback option. First day should be aligned the overall schedule (see slack lobby pinned item) with in any case. I will keep an up-to-date schedule in our slack channel. If you think there are items missing in the agenda, please let me know by the end of Friday, and I'll try to fit them into the schedule and the poll. take care, mths -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
|
From: Wout B. <wbi...@he...> - 2020-03-16 15:29:48
|
Hi Dave, A very annoying situation, but good to hear that you made it back home at least. As I'll be the only member of the working group not in EU / EU-adjacent time zones then, I'll try to wake up pretty early to participate as much as possible in the afternoon sessions we plan next week. A small advantage is that the US has already switched to daylight savings time, whereas Europe hasn't, so the difference now is "only" 8 hours instead of 9 hours. Best, Wout On 16/03/2020 07:26, Tabb, David, Prof [dt...@su...] wrote: > Hi, all. > > My wife and I had reached Johannesburg on our way to Kansas City when we > learned of an announcement by the President of South Africa, Cyril > Ramaphosa. It appears that one of the mechanisms the South African > government is using to limit exposure to the virus that causes COVID-19 > is preventing people from badly infected nations from coming into the > country. In short, if I left South Africa as planned, I might discover > that my visa to live there is revoked when I try to re-enter the > country. Natasha and I left the boarding line for our jet to JFK and > headed back for Cape Town. > > I will not be at Kansas City for this meeting but rather at Cape Town. > > Thanks, > Dave > > <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sun.ac.za%2Fenglish%2Fabout-us%2Fstrategic-documents&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Cf61f5bbd98fc42ae1f0f08d7c9b623a1%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637199656442263950&sdata=SODuWpKa3d9%2BlqKod6MRhSjngumXMahX2ImT8HFmSHg%3D&reserved=0> > > The integrity and confidentiality of this email are governed by these > terms. Disclaimer > <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sun.ac.za%2Femaildisclaimer&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Cf61f5bbd98fc42ae1f0f08d7c9b623a1%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637199656442263950&sdata=9XMTJHaf%2FgreJtjmFn0pzwkX1NG3EZhmyMQtBO8syw0%3D&reserved=0> > Die integriteit en vertroulikheid van hierdie e-pos word deur die > volgende bepalings bereël. Vrywaringsklousule > <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sun.ac.za%2Femaildisclaimer&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Cf61f5bbd98fc42ae1f0f08d7c9b623a1%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637199656442273948&sdata=7hJSKLlZ05cSn%2FZAlgUyEnpQ2Rm8lH2gd6Uz1HGRJnQ%3D&reserved=0> > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fpsidev-qc-dev&data=02%7C01%7Cwout.bittremieux%40uantwerpen.be%7Cf61f5bbd98fc42ae1f0f08d7c9b623a1%7C792e08fb2d544a8eaf72202548136ef6%7C0%7C0%7C637199656442303935&sdata=4yBpJ91VzHQfrzhmt929DbLqGmV3WJICCn4yYflku44%3D&reserved=0 > |
|
From: Tabb, D. P. [<dt...@su...> - 2020-03-16 14:26:55
|
Hi, all. My wife and I had reached Johannesburg on our way to Kansas City when we learned of an announcement by the President of South Africa, Cyril Ramaphosa. It appears that one of the mechanisms the South African government is using to limit exposure to the virus that causes COVID-19 is preventing people from badly infected nations from coming into the country. In short, if I left South Africa as planned, I might discover that my visa to live there is revoked when I try to re-enter the country. Natasha and I left the boarding line for our jet to JFK and headed back for Cape Town. I will not be at Kansas City for this meeting but rather at Cape Town. Thanks, Dave [https://cdn.sun.ac.za/100/ProductionFooter.jpg]<https://www.sun.ac.za/english/about-us/strategic-documents> The integrity and confidentiality of this email are governed by these terms. Disclaimer<https://www.sun.ac.za/emaildisclaimer> Die integriteit en vertroulikheid van hierdie e-pos word deur die volgende bepalings bere?l. Vrywaringsklousule<https://www.sun.ac.za/emaildisclaimer> |
|
From: Wout B. <wbi...@he...> - 2020-03-10 00:31:48
|
Dear colleagues, This is a reminder that our next teleconference is scheduled for Wednesday, March 11th, at 14h00 GMT (14h00 London, 15h00 Western Europe, 16h00 Cape Town, 17h00 Turkey, 7h00 San Diego). You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 I'd like propose the following agenda items: - State of the specification document (https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit). Mathias has sent out several action items, please have a look at those tasks prior to the meeting. - Julian has requested comments on the newly added SwaMe metrics: https://github.com/HUPO-PSI/mzQC/pull/98 - Planning for the PSI Spring Meeting: teleconferencing for members unable to travel / COVID-19 contingency planning. - Please communicate any other agenda items that need to be addressed in advance. Thanks, Wout |
1 message has been excluded from this view by a project administrator.
