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Re: [proteowizard-support] Cannot get native msconvert to run on Linux
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From: Brian P. <bs...@pr...> - 2023-05-10 22:16:08
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Keep in mind that the native linux build probably doesn't do what you want anyway, if what you want is conversion from vendor formats to mzML. If you're just wanting to work with open formats (e.g. convert mzML to mzXML) then you're fine. Otherwise you need to be looking at Wine/Docker. On Wed, May 10, 2023 at 2:41 PM Robert M. Flight <rfl...@gm...> wrote: > That might not be the issue. > > On Linux, you often have to use a full path or local command if it's not > on the path. > > So assuming you are within the msconvert directory, you would do > > ./msconvert > > That's dot slash msconvert, the dot means "here" in Linux paths. > > Cheers, > > Robert > > On Wed, May 10, 2023, 2:44 PM Chambers, Matthew <mat...@gm...> > wrote: > >> That error comes from bash and is telling you that you are not cd'd to >> the directory with msconvert in it. Running `ls` will list the directory >> contents. >> >> On 5/10/2023 2:27 PM, Mahood, Liz via proteowizard-support wrote: >> >> Hello, >> >> >> >> I’ve just downloaded the Linux native 64-bit binary tarball onto my >> CentOS Linux version 7. After moving it to the desired directory and >> running tar xjvf on it, all files are extracted. However, when I run >> “msconvert” from within msconvert’s home directory, I get the following >> error: >> >> >> >> bash: msconvert: command not found... >> >> >> >> According to the documentation, running “msconvert” from msconvert’s home >> directory should print many lines of usage information. >> >> >> >> Is there something I’m doing incorrectly here? Could you provide any >> advice? >> >> >> >> Thanks for your time! >> >> Best, >> >> Liz Mahood >> >> _______________________________________________ >> proteowizard-support mailing list >> pro...@li... >> https://lists.sourceforge.net/lists/listinfo/proteowizard-support >> > _______________________________________________ > proteowizard-support mailing list > pro...@li... > https://lists.sourceforge.net/lists/listinfo/proteowizard-support > |
