[proteowizard-support] Issue with Thermo RAW reader for Linux (msconvert)

[SImon M. <sim...@rw...>]

Dear ProteoWizard Team,

while working on a new Data Analysis Pipeline for Orbitrap in Linux I 
encountered a problem with msconvert when trying to convert a .raw file 
to .mzML using the command `msconvert data.RAW` (see log below).

I also tried the same in Windows where it works flawless. Is there a 
workaround to make this work in Linux? And if not do you have any 
recommendations for raw to mzML conversion via CLI?


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format: mzML
     m/z: Compression-None, 64-bit
     intensity: Compression-None, 32-bit
     rt: Compression-None, 64-bit
ByteOrder_LittleEndian
  indexed="true"
outputPath: .
extension: .mzML
contactFilename:
runIndexSet:

spectrum list filters:

chromatogram list filters:

filenames:
   01_Run.RAW

processing file: data.RAW
*[ReaderFail] [Reader_Thermo::read()] Thermo RAW reader not implemented: 
Thermo DLLs only work on Windows*
Error processing file data.RAW
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