[proteowizard-support] How to extract UV chromatogram with proteowizard

[Camille P. <cp...@he...>]

Hello,

I am a computational biologist who is looking for a way to extract the UV
chromatogram from Thermo .Raw files. I presently use msconvert for .mzXML
files, but I can not find the command/argument(s)/flag(s) in Proteowizard
that would allow me to save the UV data. Presently, I am manually
downloading the data (Retention time, and UV asbsorption) in Thermo's
software. It's terribly inefficient. I found this mention of this issue in
an old post on SoureForge:

https://sourceforge.net/p/proteowizard/mailman/message/31907462/

which signals to me that I could automate retrieving the data. But the post
doesn't have the command/argument(s)/flag(s) that could help in retrieving
the data.

Any information you might have would be immensely helpful. I hope to hear
from you soon. Many thanks in advance!!!

All the best,

Camille Pataki, Ph.D.