Re: [proteowizard-support] a bug in msconvert

[Chambers, M. <mat...@gm...>]

Hi Yue-Chern,

Thanks for reporting this. What does the 1SLin mean? Bruker's folder 
structure has always been a bit of a mystery to me. Never seen that kind 
of spot notation either, I've only seen 0_A1, 0_G4, etc.

-Matt


On 6/4/2014 12:28 PM, Yeu-Chern Harn wrote:
> Hello,
>
> I discovered there is a bug in msconvert when converting MALDI-IMS 
> data from Bruker.
> My data folder structure is like
> [data folder]\
>     0_R00X012Y006\ (folder for location (12,6) in the sample)
>         1\
>              1SLin\
>                          fid\
>     0_R00X012Y007\ (folder for location (12,7)  in the sample)
> ... ...
> When the parent folder of fid is "1SLin", msconvert cannot recognize 
> it and has the error message:
> [ReaderFail]  don't know how to read [data folder]
>
> But when the parent folder of fid is "1SRef", msconvert can recognize 
> the file.
>
> Please be aware of this bug,
> thanks,
> Yeu-Chern Harn