Re: [proteowizard-support] Bug in loading mzXML

[Mingxun W. <mi...@cs...>]

We are using the API directly.

The file we are converting has the line:

<nameValue name="recalibrationTime" value="2012-12-12T06:33:31"/>

and we get this error:

Error loadding file: [Serializer_mzXML::Handler_dataProcessing] Unexpected
element name: nameValue


-Ming


On Thu, Oct 3, 2013 at 9:01 AM, Matt Chambers <mat...@gm...>wrote:

> I just checked to make sure that pwiz does allow nameValue in the two
> places that mzXML allows nameValue elements: the msInstrument element and
> the scan element. Not sure what the issue is here.
>
> -Matt
>
>
>
> On 9/18/2013 6:40 PM, Parag Mallick wrote:
>
>> Hiya,
>>
>> Could we please get copies of the files to see?  Is msConvert/etc choking
>> on the files or are you using the API directly?
>>
>> Best,
>> ~ Parag M ~
>>
>>
>>
>> On Sep 17, 2013, at 9:58 PM, Mingxun Wang <mi...@cs...> wrote:
>>
>>  Proteowizard,
>>>
>>> So we are using pwiz to load mzXML files and it seems that if there is
>>> an XML tag for nameValue it doesn't allow it to load. nameValue is part of
>>> the standard so it should load these mzXML files.
>>>
>>> -Ming
>>>
>>
>


-- 
Mingxun Wang
UCSD CSE Graduate Student
mi...@cs...