[proteowizard-support] Error during conversion for a large HCD file from Orbi Velo

[Yu, W. <wy...@am...>]

Hi, we're see a consistent error as detailed below. The test file is a ~1.3GB HCD run from Mann's lab. The same error occurs with the most recent release of msconvert as well as the version from Nov, 2011.

Hope you can shed some light on the cause and solution to this problem. I'll be happy to send you the raw file if have to.

Thanks!
Wen Yu

ProteoWizard release: 3.0.4012 (2012-10-18)
ProteoWizard MSData: 3.0.4012 (2012-10-18)
ProteoWizard Analysis: 3.0.4011 (2012-10-17)
Build date: Oct 19 2012 06:35:33

msconvert PhophoHCD_FR_03.raw
format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) inde
xed="true"
outputPath: .
extension: .mzML
contactFilename:

filters:

filenames:
  PhophoHCD_FR_03.raw

processing file: PhophoHCD_FR_03.raw
writing output file: ./PhophoHCD_FR_03.mzML
Error writing run 1 in PhophoHCD_FR_03.raw:
[SpectrumList_Thermo::spectrum()] Error retrieving spectrum "controllerType=0 controllerNumber=1 scan=1333": [ThermoRawF
ile] [RawFileImpl::getMassList(), GetMassListFromScanNum()] Failed call to XRawfile: The system cannot find the file spe
cified.