Re: [proteowizard-support] latest Waters RAW files to mzmL

[Ziebell, M. <mic...@me...>]

Hi Matthew:

>From the ProteoWizard download site, I have "vendor_api.7z" (version 3257) containing MassLynxRaw.dll and MassLynxRaw.lib.  If I place these files in the ProteoWizard 3.0.3402 directory (freshly downloaded), should I be able to convert the Waters Synapt G2S RAW data folders?  vendor_api.7z appears password protected... Could you grant me access to these files (OR are they already updated in 3.0.3402?)  If so, I am still getting an error message during MSConvert for G2S RAW files.

Many thanks for all your help.

Michael



-----Original Message-----
From: Andrews, Christine 
Sent: Wednesday, February 01, 2012 12:09 PM
To: Matthew Chambers; Ziebell, Michael
Cc: su...@pr...
Subject: RE: [proteowizard-support] latest Waters RAW files to mzmL

Hi Matt -

I hope this message finds you well.  I wanted to check back in on status of a ProteoWizard converter for Waters Synapt G2S files to mzML. My colleague Michael asked about in the message below. Our Waters sales representative emailed me this week that the Synapt G2S data format is now supported in ProteoWizard, but I didn't see an updated version on your website.   

Any word on this converter? We are excited to try it out.

Thanks,
Christine

-----Original Message-----
From: Matthew Chambers [mailto:mat...@gm...] 
Sent: Friday, October 21, 2011 02:01 PM
To: Ziebell, Michael
Cc: su...@pr...; Andrews, Christine
Subject: Re: [proteowizard-support] latest Waters RAW files to mzmL

Hi Michael,

A Waters developer has informed me that the vendor DLL for accessing the latest data will need to be 
updated. So for the time being you won't be able to convert this data. I'll let you know when the 
update rolls out.

Thanks for the report,
-Matt


On 10/21/2011 10:08 AM, Ziebell, Michael wrote:
> Hi Matt:
> We're fans of ProteoWizard because it provides a solution to our need to analyze MS data from
> different instruments/vendors using the same processing platform.
> We're currently having difficulties converting RAW files generated by the _Waters Synapt G2
> __*S*___mass spectrometer into mzmL format using ProteoWizard. Waters is not being particularly
> helpful but it is clear that the latest version of MassLynx is required to view these data sets
> directly -- which we will obtain shortly. Do you expect ProteoWizard to work on all Waters RAW
> files? If we still are unable to convert these RAW files once we have the latest version of
> MassLynx, would you be willing to take a crack at converting them? I imagine we will not be the only
> people asking for this in the future.
> Any suggestions you have would be most appreciated.
> Thank you,
> Michael
Notice:  This e-mail message, together with any attachments, contains
information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station,
New Jersey, USA 08889), and/or its affiliates Direct contact information
for affiliates is available at 
http://www.merck.com/contact/contacts.html) that may be confidential,
proprietary copyrighted and/or legally privileged. It is intended solely
for the use of the individual or entity named on this message. If you are
not the intended recipient, and have received this message in error,
please notify us immediately by reply e-mail and then delete it from 
your system.