Re: [proteowizard-developer] Assertion Failure in Skyline Tests Debug Build

[Matthew C. <mat...@gm...>]

Yes, I do see the failure on FullScanFilterTest. But I see other failures too. :/

   Passed                pwiz.SkylineTest.IdentityTest.IdentityBaseTest
   Passed                pwiz.SkylineTest.IdentityTest.IdentityPathTest
   Passed                pwiz.SkylineTest.Proteome.ProteomeDbTest.TestProteomeDb
   Passed                pwiz.SkylineTest.Proteome.ProteomeDbTest.TestProteomeDb2
   Passed                pwiz.SkylineTest.Reporting.PivotTypeTest.TestCrosstabValues
   Passed                pwiz.SkylineTest.Reporting.PivotTypeTest.TestGroupByColumns
   Passed                pwiz.SkylineTest.Reporting.ReportTest.TestColumnsFromResultsTables
   Passed                pwiz.SkylineTest.Reporting.ReportTest.TestIsotopeLabelPivot
   Passed                pwiz.SkylineTest.Reporting.ReportTest.TestLoadReportFile
   Passed                pwiz.SkylineTest.Reporting.ReportTest.TestReportSpecList
   Passed                pwiz.SkylineTest.Reporting.ReportTest.TestReportSpecListXml
   Passed                pwiz.SkylineTest.Results.AgilentMixTest.AgilentFormatsTest
   Passed                pwiz.SkylineTest.Results.SmallWiffTest.WiffResultsTest
   Failed                pwiz.SkylineTest.Results.ThermoQuantTest.ThermoCancelImportTest
   Failed                pwiz.SkylineTest.Results.ThermoQuantTest.ThermoFormatsTest
   Failed                pwiz.SkylineTest.Results.ThermoQuantTest.ThermoRatioTest
   Passed                pwiz.SkylineTest.Results.WatersCalcurveTest.WatersCacheTest
   Passed                pwiz.SkylineTest.Results.WatersCalcurveTest.WatersMultiFileTest
   Passed                pwiz.SkylineTest.Results.WatersCalcurveTest.WatersMultiReplicateTest
   Passed                pwiz.SkylineTest.Results.WatersCalcurveTest.WatersMzXmlTest
   Passed                pwiz.SkylineTest.SrmDocEditTest.ImportFastaTest
   Passed                pwiz.SkylineTest.SrmDocEditTest.MoveNodeTest
   Passed                pwiz.SkylineTest.SrmDocEditTest.RemoveDuplicatePeptidesTest
   Passed                pwiz.SkylineTest.SrmDocumentTest.DocumentExport_0_1_Test
   Passed                pwiz.SkylineTest.SrmDocumentTest.DocumentExportProteinsTest
   Passed                pwiz.SkylineTest.SrmDocumentTest.DocumentNodeCountsTest
   Passed                pwiz.SkylineTest.SrmDocumentTest.DocumentSerialize_0_1_Test
   Passed                pwiz.SkylineTest.SrmDocumentTest.DocumentSerializeStubTest
   Passed                pwiz.SkylineTest.SrmDocumentTest.PeptideGroupSerializeTest
   Passed                pwiz.SkylineTest.SrmDocumentTest.PeptideSerializeTest
   Passed                pwiz.SkylineTest.SrmSettingsChangeTest.SettingsChangeMassCalcProps
   Passed                pwiz.SkylineTest.SrmSettingsChangeTest.SettingsChangeNotDoc
   Passed                pwiz.SkylineTest.SrmSettingsChangeTest.SettingsChangePeptides
   Passed                pwiz.SkylineTest.SrmSettingsChangeTest.SettingsChangeTranGroups
   Passed                pwiz.SkylineTest.SrmSettingsChangeTest.SettingsChangeTrans
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeCollisionEnergyListTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeCollisionEnergyTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeDeclusteringPotentialTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeDigestTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeEnzymeTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeFragmentLossTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeIsotopeEnrichmentsTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeMeasuredIonTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializePeptideFilterTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializePeptideModificationsTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializePeptidePredictionTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeStaticModTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeTransitionFilterTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeTransitionFullScanTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeTransitionInstrumentTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SerializeTransitionPredictionTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SettingsSerialize_0_1_Test
   Passed                pwiz.SkylineTest.SrmSettingsTest.SettingsSerializeCurrentTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SettingsSerializeDefaultsTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SettingsSerializeListsTest
   Passed                pwiz.SkylineTest.SrmSettingsTest.SettingsSerializeStubTest
   Passed                pwiz.SkylineTest.SSRCalc3Test.ScoreSequence_300A_Test
   Passed                pwiz.SkylineTest.StatisticsTest.AlphaTest
   Passed                pwiz.SkylineTest.StatisticsTest.BetaTest
   Passed                pwiz.SkylineTest.StatisticsTest.CostaSoaresTest
   Passed                pwiz.SkylineTest.StatisticsTest.CovarianceTest
   Passed                pwiz.SkylineTest.StatisticsTest.IQTest
   Passed                pwiz.SkylineTest.StatisticsTest.LengthTest
   Passed                pwiz.SkylineTest.StatisticsTest.MaxTest
   Passed                pwiz.SkylineTest.StatisticsTest.MeanTest
   Passed                pwiz.SkylineTest.StatisticsTest.MeanWeightedTest
   Passed                pwiz.SkylineTest.StatisticsTest.MedianTest
   Passed                pwiz.SkylineTest.StatisticsTest.MiddleOfRangeTest
   Passed                pwiz.SkylineTest.StatisticsTest.MinTest
   Passed                pwiz.SkylineTest.StatisticsTest.ModeTest
   Passed                pwiz.SkylineTest.StatisticsTest.Percentile
   Passed                pwiz.SkylineTest.StatisticsTest.Q1Test
   Passed                pwiz.SkylineTest.StatisticsTest.Q3Test
   Passed                pwiz.SkylineTest.StatisticsTest.RangeTest
   Passed                pwiz.SkylineTest.StatisticsTest.RegressionTest
   Passed                pwiz.SkylineTest.StatisticsTest.RTest
   Passed                pwiz.SkylineTest.StatisticsTest.StdDevTest
   Passed                pwiz.SkylineTest.StatisticsTest.StdDevWeightedTest
   Passed                pwiz.SkylineTest.StatisticsTest.VarianceTest
   Passed                pwiz.SkylineTest.StatisticsTest.VarianceWeightedTest
   Passed                pwiz.SkylineTest.StatisticsTest.YULETest
   Passed                pwiz.SkylineTest.StatisticsTest.ZTest
   Passed                pwiz.SkylineTest.UndoManagerTest.UndoRedoMultiTest
   Passed                pwiz.SkylineTest.UndoManagerTest.UndoTransactionTest
   Passed                pwiz.SkylineTest.UtilTest.DsvHelperTest
   82/85 test(s) Passed, 3 Failed

Passed                pwiz.SkylineTestA.CommandLineTest.ConsoleMassListTest
Passed                pwiz.SkylineTestA.CommandLineTest.ConsolePathCoverage
Failed                pwiz.SkylineTestA.CommandLineTest.ConsoleReplicateOutTest
Failed                pwiz.SkylineTestA.CommandLineTest.ConsoleReportExportTest
Passed                pwiz.SkylineTestA.ExplicitModTest.AddRemoveExplicitModTest
Passed                pwiz.SkylineTestA.ExplicitModTest.ChangeSettingsExplicitModTest
Passed                pwiz.SkylineTestA.ExplicitModTest.ModifyExplicitModTest
Passed                pwiz.SkylineTestA.ExplicitModTest.Study7RoundtripTest
Passed                pwiz.SkylineTestA.FastaImporterTest.ProteinListTest
Passed                pwiz.SkylineTestA.FindNodeTest.TestFindNode
Passed                pwiz.SkylineTestA.IsotypeModTest.MultiLabelExplicitSerialTest
Passed                pwiz.SkylineTestA.IsotypeModTest.MultiLabelTypeListTest
Passed                pwiz.SkylineTestA.IsotypeModTest.MultiLabelTypeTest
Passed                pwiz.SkylineTestA.LibraryLoadTest.BiblioSpecLoadLibrary
Passed                pwiz.SkylineTestA.LibraryLoadTest.HunterLoadLibrary
Passed                pwiz.SkylineTestA.LibraryLoadTest.NistLoadLibrary
Passed                pwiz.SkylineTestA.LibrarySettingsTest.LibraryMultipleTest
Passed                pwiz.SkylineTestA.LibrarySettingsTest.LibraryNoIonsTest
Passed                pwiz.SkylineTestA.LibrarySettingsTest.LibraryOnlyPeptidesTest
Passed                pwiz.SkylineTestA.LibrarySettingsTest.LibraryTransitionTest
Passed                pwiz.SkylineTestA.LossesTest.NeutralLossListTest
Passed                pwiz.SkylineTestA.MassCalcTest.BioMassCalcAbundanceMassesTest
Passed                pwiz.SkylineTestA.ModificationMatcherTest.TestModificationMatcher
Passed                pwiz.SkylineTestA.PasteTest.TestPaste
Passed                pwiz.SkylineTestA.RefineTest.RefineDocumentTest
Passed                pwiz.SkylineTestA.RefineTest.RefineResultsTest
Failed                pwiz.SkylineTestA.Results.FullScanTest.FullScanFilterTest
Passed                pwiz.SkylineTestA.Results.FullScanTest.FullScanSettingsTest
Passed                pwiz.SkylineTestA.TransitionSettings07Test.DynamicMinMzTest
Passed                pwiz.SkylineTestA.TransitionSettings07Test.SpecialFragmentTest
Passed                pwiz.SkylineTestA.TransitionSettings07Test.TransitionLibrary07Test
Passed                pwiz.SkylineTestA.UniModTest.TestUniMod
Passed                pwiz.SkylineTestA.VariableModTest.VariableModBasicTest
Passed                pwiz.SkylineTestA.VariableModTest.VariableModImportListTest
Passed                pwiz.SkylineTestA.VariableModTest.VariableModLibraryTest
Passed                pwiz.SkylineTestA.VariableModTest.VariableModPeptideListTest
Passed                pwiz.SkylineTestA.VariableModTest.VariableModSerializeTest
34/37 test(s) Passed, 3 Failed


On 7/23/2011 7:04 PM, Brendan MacLean wrote:
> Hi Matt,
> I am not sure why Team City is not encountering this, but every time I run a full debug build,
> running the Skyline tests, I get the attached assertion failure during the Skyline
> FullScanFilterTest.  If I ignore it, everything complete successfully, but it would be nice not to
> have to wait around to click the Ignore button.
>
> Would you mind having a look at whether you also get this failure?  running:
>
> quickbuild debug pwiz_tools/Skyline
>
> Thanks.
>
> --Brendan