Re: [proteowizard-support] msconvert error

[Matthew C. <mat...@gm...>]

I doubt it'll fix this issue, but just in case, try this conversion using the latest version of 
ProteoWizard. At the very least, it'll give a much better conversion of Thermo data, e.g. isolation 
windows parsed from the instrument method.

-Matt


On 1/17/2011 9:45 PM, Henry H. N. Lam wrote:
> Dear Matt/Darren,
>
> This is Henry Lam, formerly of ISB. I have been using msconvert to convert Thermo RAW files to
> mzXML/mzML, but recently I ran into some RAW files that are very big (over 2 GB). I don't know if
> that's the reason or not (smaller files from the same dataset were converted normally), but
> msconvert gives a cryptic error:
>
> processing file: 25ulV_110112104522.RAW
>
> (... a minute or two passes...)
>
>   [SHA1Calculator] Error hashing file ./25ulV_110112104522.RAW
> Error processing file 25ulV_110112104522.RAW
>
> I used all default parameters. The version was 1.6.1386 (2009-10-06).
>
> Could you help sort this out? Thanks for your help in advance.
>
> Henry