Re: [proteowizard-support] Problems converting Thermo RAW files with msconvert

[Natalie T. <nat...@in...>]

Hello Kenneth,

A quick, probably obvious question: can you open the files in question  
with the same Thermo software version installed on the test machines?

Natalie


On Aug 5, 2009, at 12:39 PM, Kenneth Ray wrote:

> Hi,
>
> I have been having trouble getting msconvert to produce mzML or mzXML
> files from Thermo RAW data files on Windows machines.
>
> A typical session looks like this:
>
> "C:\pwiz-1.5.2-tools-windows-i386>msconvert data\test24mer.RAW
> format: mzML (Precision_64 [ 1000514:Precision_64
> 1000515:Precision_32 ], ByteOr
> der_LittleEndian, Compression_None) indexed="true"
> outputPath: .
> extension: .mzML
> contactFilename:
>
> filters:
>
> filenames:
>   data/test24mer.RAW
>
> processing file: data/test24mer.RAW
> writing output file: ./test24mer.mzML
> [ReaderFail] [ThermoRawFile] Failed HRESULT returned from COM  
> object: 5
> Error processing file data/test24mer.RAW"
>
> The same result is obtained when I specify --mzXML output.  It looks
> like msconvert writes some of the output file and then throws the
> error right after it writes the last spectrum.
>
> I've tried this on three different computers (mine with Win XP Pro and
> Xcalibur 2.1.0.1105, as well as two others with similar though not
> identical configurations) and still see the same error message.  All
> have the Windows binary of ProteoWizard installed onto systems with
> working Xcalibur installations.
>
> I did not see this error message when I Googled it, so any ideas you
> can offer would be greatly appreciated.
>
> Thanks!
> Ken
>
> Kenneth L. Ray, Ph.D.
> Novatia, LLC
> 11 Deerpark Dr., Suite 202
> Monmouth Junction, NJ 08852
> p 732-274-9933 x105
> f 732-274-9935
> ra...@en...
>
>
>
>
>
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