[proteowizard-support] Forward of moderated message

[<pro...@li...>]

Dear Members of PWIZ,

I've created an mzML0.99.12 with msconvert and an mzML_0.99.1 file  
using a ReAdW 3.5.4 binary:

and tried to validate these files with the ProDaC on-line validator
at http://eddie.thep.lu.se/prodac_validator/validator.pl

I'm getting this message for both files:

Local mzML requested, using v0.99.1
myraw.mzML failed validation

XSD validator output:

Reading schema from file
Schema:mzML-0.99.1.xsd
ERROR:  'cvc-elt.1: Cannot find the declaration of element 'indexedmzML'.'
cvc-elt.1: Cannot find the declaration of element 'indexedmzML'.


I also cannot read them in Insillico Viewer something that should ?

My mzML files both contain in indexedmzML start and end tags

I want to write software that somehow

converts a RAW file to MZML/MZXML and filters from the MZML/MZXML file  
for a tandem/MS experiment information about the precursor ion  
fingerprints which is stored in:

[Term]
id: MS:1000512
name: filter string
def: "A string unique to Thermo instrument describing instrument  
settings for the scan." [PSI:MS]
is_a: MS:1000503 ! scan attribute

And build a object tree from the precursors and finally build a  
fragmentation pattern. There is currently no software except  
MassFrontier and Xcalibur that can do this. The free R package XCMS is  
trying to do this but this is not succesfully done yet.

So I want to learn which options I have do someone can advice me about  
my goals
and also advice me how I could benefit from MzML?

Thanx in advance

M. Heuvel Scientific Programmer
Gorlaeus Laboratorias
Einsteinweg 55
2333 CC Leiden