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#653 Annotation Extension disappears when changing allele name

None
closed-fixed
None
8
2013-11-21
2013-11-05
No

Just happened in this session:
http://curation.pombase.org/pombe/curs/60d1480f79c0c05b

I changed the allele name from Sam7 to sam7 or Sam5 to sam5 and the annotation extension disappeared for each one. The extension should be kept.

Related

Curation tool: #662

Discussion

  • Valerie Wood

    Valerie Wood - 2013-11-05

    Is it possible to see if any annotation_extension have EVER gone missing?
    There are not many reasons to remove them, so if they have disappeared over time it is likely to be due to this phenomena

    (Antonia I think it doesn't always happen. Does it happen if the session is reactivated , but not in approval? or the other way around?..I'm not sure...)

     
  • Valerie Wood

    Valerie Wood - 2013-11-05

    Antonai, I thought you wanted a session restore for this? or did you remember what was lost?

     
  • Antonia Lock

    Antonia Lock - 2013-11-05

    I emailed Kim separately about a session restore it, he said he'd fix.

    And yeah, I'm not sure but this might only happen in approval mode.

     
  • Kim Rutherford

    Kim Rutherford - 2013-11-05

    Sorry about the bug! It's fix now.

    Does it happen if the session is reactivated , but not in approval?

    It would have happened in approval mode and normal mode. Any time you click to edit an allele name or evidence and then click "Edit".

    I emailed Kim separately about a session restore it, he said he'd fix.

    I'll do that now.

    Is it possible to see if any annotation_extension have EVER gone missing?

    Unfortunately it's bit tricky - I'd need to write some code to go back through the backup files and compare annotation between each pair of backups. I'm happy to give it a go if you think it's worth it.

     
  • Valerie Wood

    Valerie Wood - 2013-11-06

    Its low priority but it would be nice to know....
    Maybe open a ticket for it with priority 1 or 2 (which likely mean it will never happen...but if we ever got a voulunteer, or if some sort of widgit became avaiable, we could do it.

     
  • Kim Rutherford

    Kim Rutherford - 2013-11-21
    • status: open --> closed-fixed
    • Group: -->
     
  • Kim Rutherford

    Kim Rutherford - 2013-11-21

    Its low priority but it would be nice to know....

    I've made a ticket about: https://sourceforge.net/p/pombase/curation-tool/662/

     

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