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Commit [r1797]  Maximize  Restore  History

New package structure

dcaffrey 2023-06-29

1 2 3 .. 9 > >> (Page 1 of 9)
added /trunk/pfaat/src/org/pfaat
added /trunk/pfaat/src/org/pfaat/commandline
added /trunk/pfaat/src/org/pfaat/commandline/msa
added /trunk/pfaat/src/org/pfaat/commandline/msa/BindingMatrix.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/BindingMatrixCentral.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/Clustal2Pfaat.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/CopyResidueAnnotsWithInPfaat.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/CreateLegend.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/EmpiricAl.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/ExportResidueAnnotations.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/ExportSequenceAnnotations.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoreForClusters.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoresForClustersWithResidueAnnotation.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetMutualInformationForShortReads.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetRepresentedResidues.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueCounts.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueCountsQuickly.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueProperties.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetSpeciesForEnsemblId.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/GetTwoResidueAnnotations.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/ImportResidueAnnotations.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/ImportSequenceAnnotations.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/ModifiedShannon.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/NumberOfIdenticalResiduesForSelect.java
added /trunk/pfaat/src/org/pfaat/commandline/msa/NumberOfNonIdenticalResiduesForSelect.java
/trunk/pfaat/src/org/pfaat/commandline/msa/BindingMatrix.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/BindingMatrixCentral.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/Clustal2Pfaat.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/CopyResidueAnnotsWithInPfaat.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/CreateLegend.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/EmpiricAl.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/ExportResidueAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/ExportSequenceAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoreForClusters.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoresForClustersWithResidueAnnotation.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetMutualInformationForShortReads.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetRepresentedResidues.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueCounts.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueCountsQuickly.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetResidueProperties.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetSpeciesForEnsemblId.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/GetTwoResidueAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/ImportResidueAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/ImportSequenceAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/ModifiedShannon.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/NumberOfIdenticalResiduesForSelect.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/msa/NumberOfNonIdenticalResiduesForSelect.java Diff Switch to side-by-side view
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1 2 3 .. 9 > >> (Page 1 of 9)