Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

Commit [r1797] Maximize Restore History

New package structure

Authored by: dcaffrey 2023-06-29

Browse code at this revision

Parent: [r1796]

Child: [r1798]

<< < 1 2 3 4 5 .. 9 > >> (Page 3 of 9)

added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetInterfaceResidues.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMeanPairwiseDistance.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenChains.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenResidueSet1AndResidueSet2.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatchesLog.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetResFileForBackrub.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetSequenceForScwrl.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/RenumberAssociatedStructures.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/ReportAtomsWithinSpecifiedDistanceOfEachOther.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/ssapSuperposeToResAnnot.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree
added	/trunk/pfaat/src/org/pfaat/commandline/tree/Atv.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/BranchRatiosForDuplicates.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/ExportLeafNames.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/GetMostAncientWithinSpeciesParalog.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/GetOutgroupOfRootedTree.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToTaggedUnrootedNh.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNh.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForAdaptiveBranchSiteLikelihood.java
added	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForRelaxDup.java

/trunk/pfaat/src/org/pfaat/commandline/structure/GetInterfaceResidues.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMeanPairwiseDistance.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenResidueSet1AndResidueSet2.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatchesLog.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetResFileForBackrub.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetSequenceForScwrl.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/RenumberAssociatedStructures.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/ReportAtomsWithinSpecifiedDistanceOfEachOther.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/ssapSuperposeToResAnnot.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree

Directory.

/trunk/pfaat/src/org/pfaat/commandline/tree/Atv.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/BranchRatiosForDuplicates.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/ExportLeafNames.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/GetMostAncientWithinSpeciesParalog.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/GetOutgroupOfRootedTree.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToTaggedUnrootedNh.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNh.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForAdaptiveBranchSiteLikelihood.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForRelaxDup.java Diff Switch to side-by-side view

<< < 1 2 3 4 5 .. 9 > >> (Page 3 of 9)