Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

Commit [r1797] Maximize Restore History

New package structure

Authored by: dcaffrey 2023-06-29

Browse code at this revision

Parent: [r1796]

Child: [r1798]

<< < 1 2 3 4 .. 9 > >> (Page 2 of 9)

added	/trunk/pfaat/src/org/pfaat/commandline/msa/PamForSelect.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Clustal.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Codon.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Phylip.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2PhylipCdna.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/PidForSelect.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/RenameSequences.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/SpecificityPatch.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/SubFamilyDesignator.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/SubfamilySummary.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/VneFamily.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/VneScore.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/VneSpecificityScore.java
added	/trunk/pfaat/src/org/pfaat/commandline/msa/getDeconstrainedSubfamilyResidues.java
added	/trunk/pfaat/src/org/pfaat/commandline/sandbox
added	/trunk/pfaat/src/org/pfaat/commandline/structure
added	/trunk/pfaat/src/org/pfaat/commandline/structure/AssociateMultipleStructures.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/AssociatePdbChainToAlignment.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateInterfaceResiduesInPfaat.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateResidueAccessibilitiesWithinPfaat.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetBindingSiteResiduesForLigand.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetCavity.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetChainLengths.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetChains.java
added	/trunk/pfaat/src/org/pfaat/commandline/structure/GetFractionOfResiduesWithinDistance.java

/trunk/pfaat/src/org/pfaat/commandline/msa/PamForSelect.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Clustal.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Codon.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2Phylip.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/Pfaat2PhylipCdna.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/PidForSelect.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/RenameSequences.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/SpecificityPatch.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/SubFamilyDesignator.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/SubfamilySummary.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/VneFamily.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/VneScore.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/VneSpecificityScore.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/getDeconstrainedSubfamilyResidues.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/sandbox

Directory.

/trunk/pfaat/src/org/pfaat/commandline/structure

Directory.

/trunk/pfaat/src/org/pfaat/commandline/structure/AssociateMultipleStructures.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/AssociatePdbChainToAlignment.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateInterfaceResiduesInPfaat.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateResidueAccessibilitiesWithinPfaat.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetBindingSiteResiduesForLigand.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetCavity.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetChainLengths.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetFractionOfResiduesWithinDistance.java Diff Switch to side-by-side view

<< < 1 2 3 4 .. 9 > >> (Page 2 of 9)